Genus Nakamurella
Warning: In the List of Prokaryotic names with Standing in Nomenclature, an arrow (→) only indicates the sequence of valid publication of names and does not mean that the last name in the sequence must be used (see: Introduction).
Number of species, including synonyms, cited in this file: 7
Number of subspecies, including synonyms, cited in this file: 0
Classification (Warning: see also the file "Classification of prokaryotes: Introduction").
For a detailed description of this taxon see Bergey’s Manual of Systematics of Archaea and Bacteria (BMSAB).
Nakamurella Tao et al. 2004, gen. nov. (Type genus of the family ¤ Nakamurellaceae Tao et al. 2004).
Type species: ¤ Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004.
Illegitimate synonym: ¤ Microsphaera Yoshimi et al. 1996.
Etymology: N.L. fem. dim. n. Nakamurella, to honour the Japanese microbiologist Professor Kazunori Nakamura.
Valid publication: TAO (T.S.), YUE (Y.Y.), CHEN (W.X.) and CHEN (W.F.): Proposal of Nakamurella gen. nov. as a substitute for the bacterial genus Microsphaera Yoshimi et al. 1996 and Nakamurellaceae fam. nov. as a substitute for the illegitimate bacterial family Microsphaeraceae Rainey et al. 1997. Int. J. Syst. Evol. Microbiol., 2004, 54, 999-1000.
Original article in IJSEM Online
Notes:
1 The name ¤ Microsphaera Yoshimi et al. 1996 is illegitimate because of precedence of the fungal genus Microsphaera (Wallr.) Léveillé 1851 [Principle 2, Rule 51b(4)]. Consequently, a new genus designation Nakamurella has been proposed by Tao et al. 2004.
2 In the etymology of the genus Nakamurella, provided by Tao et al. 2004, the first name of Prof. Nakamura is erroneously cited as Kazonuri.
Reference: KUDO (T.): Personal communication (August 17, 2006).
Note: According to Kim et al. 2012 Nakamurella Tao et al. 2004 is an earlier heterotypic synonym of the names ¤ Humicoccus Yoon et al. 2007, and ¤ Saxeibacter Lee et al. 2008.
References:
1 KIM (K.K.), LEE (K.C.) and LEE (J.S.): Nakamurella panacisegetis sp. nov. and proposal for reclassification of Humicoccus flavidus Yoon et al., 2007 and Saxeibacter lacteus Lee et al., 2008 as Nakamurella flavida comb. nov. and Nakamurella lactea comb. nov. Syst. Appl. Microbiol., 2012, 35, 291-296.
Effective publication Online
2 ASSOCIATE EDITOR, IJSEM: Validation List no. 148 (footnote ****). Int. J. Syst. Evol. Microbiol., 2012, 62, 2549-2554.
Validation List no. 148 in IJSEM Online
→ Nakamurella Tao et al. 2004 emend. Kim et al. 2012.
References: List of Changes in Taxonomic Opinion no. 17. Int. J. Syst. Evol. Microbiol., 2013, 63, 8-9. [KIM (K.K.), LEE (K.C.) and LEE (J.S.): Nakamurella panacisegetis sp. nov. and proposal for reclassification of Humicoccus flavidus Yoon et al., 2007 and Saxeibacter lacteus Lee et al., 2008 as Nakamurella flavida comb. nov. and Nakamurella lactea comb. nov. Syst. Appl. Microbiol., 2012, 35, 291-296.]
List of Changes in Taxonomic Opinion no. 17 in IJSEM Online - Effective publication Online
Nakamurella endophytica Tuo et al. 2016, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) 2Q3S-4-2=DSM 100722=CGMCC 4.7308.
Sequence accession no. (16S rRNA gene) for the type strain: KT971019.
Whole-genome sequence accession no. for the type strain: -.
Etymology: Gr. pref. endo, within; Gr. n. phyton, plant; L. fem. suff. -ica, adjectival suffix used with the sense of belonging to; N.L. fem. adj. endophytica, within plant; endophytic pertaining to the original isolation from plant tissues.
Source: Plant.
Valid publication: TUO, L., LI, F. N., PAN, Z., LOU, I., GUO, M., MING-YUEN LEE, S., CHEN, L., HU, L. and SUN, C. H. 2016. Nakamurella endophytica sp. nov., a novel endophytic actinobacterium isolated from the bark of Kandelia candel. Int. J. Syst. Evol. Microbiol., 66, 1577-1582.
Original article in IJSEM Online
Nakamurella flavida (Yoon et al. 2007) Kim et al. 2012, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) DS-52 = CIP 108919 = JCM 15652 = KCTC 19127.
Sequence accession no. (16S rRNA gene) for the type strain: DQ321750.
Basonym: ¤ Humicoccus flavidus Yoon et al. 2007.
Etymology: L. fem. adj. flavida, pale yellow.
Valid publication: Validation List no. 148. Int. J. Syst. Evol. Microbiol., 2012, 62, 2549-2554.
Effective publication: KIM (K.K.), LEE (K.C.) and LEE (J.S.): Nakamurella panacisegetis sp. nov. and proposal for reclassification of Humicoccus flavidus Yoon et al., 2007 and Saxeibacter lacteus Lee et al., 2008 as Nakamurella flavida comb. nov. and Nakamurella lactea comb. nov. Syst. Appl. Microbiol., 2012, 35, 291-296.
Validation List no. 148 in IJSEM Online - Effective publication Online
Nakamurella intestinalis Kim et al. 2017, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) 63MJ-1=KACC 18662=NBRC 111844.
Sequence accession no. (16S rRNA gene) for the type strain: KU379671.
Etymology: N.L. fem. adj. intestinalis, pertaining to the intestine.
Source: Animal.
Valid publication: KIM, S. J., CHO, H., JOA, J. H., HAMADA, M., AHN, J. H., WEON, H. Y. and KWON, S. W. 2017. Nakamurella intestinalis sp. nov., isolated from the faeces of Pseudorhynchus japonicus. Int. J. Syst. Evol. Microbiol., 67, 2970-2974.
Original article in IJSEM Online
Nakamurella lactea (Lee et al. 2008) Kim et al. 2012, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) DLS-10 = DSM 19367 = JCM 16024 = KCTC 19285.
Sequence accession no. (16S rRNA gene) for the type strain: AM778124.
Basonym: ¤ Saxeibacter lacteus Lee et al. 2008.
Etymology: L. fem. adj. lactea, milk-coloured, milky.
Valid publication: Validation List no. 148. Int. J. Syst. Evol. Microbiol., 2012, 62, 2549-2554.
Effective publication: KIM (K.K.), LEE (K.C.) and LEE (J.S.): Nakamurella panacisegetis sp. nov. and proposal for reclassification of Humicoccus flavidus Yoon et al., 2007 and Saxeibacter lacteus Lee et al., 2008 as Nakamurella flavida comb. nov. and Nakamurella lactea comb. nov. Syst. Appl. Microbiol., 2012, 35, 291-296.
Validation List no. 148 in IJSEM Online - Effective publication Online
→ Nakamurella lactea (Lee et al. 2008) Kim et al. 2012 emend. Nouioui et al. 2017.
Reference: NOUIOUI, I., GÖKER, M., CARRO, L., MONTERO-CALASANZ, M. D. C., ROHDE, M., WOYKE, T., KYRPIDES, N. C. and KLENK, H.-P. 2017. High quality draft genome of Nakamurella lactea type strain, a rock actinobacterium, and emended description of Nakamurella lactea. Stand. Genomic Sci. 12, 4.
Original article.
Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004, comb. nov. (Type species of the genus.)
Type strain: (see also Global Catalogue of Microorganisms) Y-104 = ATCC 700099= CIP 104796 = DSM 44233 = JCM 9543.
Sequence accession no. (16S rRNA gene) for the type strain: CP001737 (complete genome).
Illegitimate basonym: ¤ Microsphaera multipartita Yoshimi et al. 1996.
Etymology: L. adj. multus, much, great, many; L. fem. part. adj. partita (from L. v. partio partire, to divide, part, distribute) divided, parted, distributed; N.L. fem. part. adj. multipartita, micro-organisms having many divisions inside the cell.
Valid publication: TAO (T.S.), YUE (Y.Y.), CHEN (W.X.) and CHEN (W.F.): Proposal of Nakamurella gen. nov. as a substitute for the bacterial genus Microsphaera Yoshimi et al. 1996 and Nakamurellaceae fam. nov. as a substitute for the illegitimate bacterial family Microsphaeraceae Rainey et al. 1997. Int. J. Syst. Evol. Microbiol., 2004, 54, 999-1000.
Original article in IJSEM Online
Note: The name ¤ Microsphaera multipartita Yoshimi et al. 1996 is illegitimate because of precedence of the fungal genus Microsphaera (Wallr.) Léveillé 1851 [Principle 2, Rule 51b(4)]. Consequently, a new species designation Nakamurella multipartita (Yoshimi et al. 1996) Tao et al. 2004, has been proposed by Tao et al. 2004.
Nakamurella panacisegetis Kim et al. 2012, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) P4-7 = CECT 7604 = KCTC 19426.
Sequence accession no. (16S rRNA gene) for the type strain: HE599560.
Etymology: N.L. n. Panax -acis, scientific name of ginseng; L. gen. n. segetis, of the soil; N.L. gen. n. panacisegetis, of soil of a ginseng field.
Valid publication: Validation List no. 148. Int. J. Syst. Evol. Microbiol., 2012, 62, 2549-2554.
Effective publication: KIM (K.K.), LEE (K.C.) and LEE (J.S.): Nakamurella panacisegetis sp. nov. and proposal for reclassification of Humicoccus flavidus Yoon et al., 2007 and Saxeibacter lacteus Lee et al., 2008 as Nakamurella flavida comb. nov. and Nakamurella lactea comb. nov. Syst. Appl. Microbiol., 2012, 35, 291-296.
Validation List no. 148 in IJSEM Online - Effective publication Online
Nakamurella silvestris Franca et al. 2016, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) S20-107=DSM 102309=LMG 29427.
Sequence accession no. (16S rRNA gene) for the type strain: KP899234.
Whole-genome sequence accession no. for the type strain: .
Etymology: L. fem. adj. silvestris, from forest, referring to the origin of the strain.
Source: Environmental - soil.
Valid publication: FRANCA, L., ALBUQUERQUE, L., ZHANG, D. C., NOUIOUI, I., KLENK, H. P., DA COSTA, M. S. and MARGESIN, R. 2016. Nakamurella silvestris sp. nov., an actinobacterium isolated from alpine forest soil. Int. J. Syst. Evol. Microbiol., 66, 5460-5464.
Original article in IJSEM Online