Genus Chryseobacterium

Name: Chryseobacterium Vandamme et al. 1994

Category: Genus

Proposed as: gen. nov.

Etymology: Gr. adj. chruseos, golden; L. neut. n. bacterium, a small rod; N.L. neut. n. Chryseobacterium, a yellow rod

Gender: neuter

Type species: Chryseobacterium gleum (Holmes et al. 1984) Vandamme et al. 1994

Conduct genome-based taxonomy of genus at TYGS

16S rRNA gene: Analyse FASTA

Valid publication: Vandamme P, Bernardet JF, Segers P, Kersters K, Holmes B. New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int. J. Syst. Bacteriol. 1994; 44:827-831.

IJSEM list: Anonymous. Notification list. Notification that new names and new combinations have appeared in volume 44, part 4 of the IJSB. Int J Syst Bacteriol 1995; 45:199-200.

Nomenclatural status: validly published

Taxonomic status: correct name

Synonyms:

Name	Kind
Halpernia Nicholson et al. 2020	heterotypic synonym, validly published
Epilithonimonas O'Sullivan et al. 2006	heterotypic synonym, validly published
Planobacterium Peng et al. 2009	heterotypic synonym, validly published
Soonwooa Joung et al. 2010	heterotypic synonym, validly published
Kaistella Kim et al. 2004	heterotypic synonym, validly published
Sejongia Yi et al. 2005	heterotypic synonym, validly published

Emendations:
- Kämpfer et al. 2009 Kampfer P, Vaneechoutte M, Lodders N, De Baere T, Avesani V, Janssens M, Busse HJ, Wauters G. Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium. Int J Syst Evol Microbiol 2009; 59:2421-2428. Euzeby JP. Notification list. Notification that new names and new combinations have appeared in volume 59, part 10 of the IJSEM. Int J Syst Evol Microbiol 2010; 60:3-4.
  Notes:
  - Emendation accompanied by the proposal of 2 new species in the genus.
- Wu et al. 2013 Wu YF, Wu QL, Liu SJ. Chryseobacterium taihuense sp. nov., isolated from a eutrophic lake, and emended descriptions of the genus Chryseobacterium, Chryseobacterium taiwanense, Chryseobacterium jejuense and Chryseobacterium indoltheticum. Int J Syst Evol Microbiol 2013; 63:913-919. Euzeby JP. Notification list. Notification that new names and new combinations have appeared in volume 63, part 3 of the IJSEM. Int J Syst Evol Microbiol 2013; 63:1939-1941.
  Notes:
  - Emendation accompanied by the proposal of 1 new species in the genus.
- Montero-Calasanz et al. 2014 Montero-Calasanz Mdel C, Goker M, Rohde M, Sproer C, Schumann P, Busse HJ, Schmid M, Klenk HP, Tindall BJ, Camacho M. Chryseobacterium oleae sp. nov., an efficient plant growth promoting bacterium in the rooting induction of olive tree (Olea europaea L.) cuttings and emended descriptions of the genus Chryseobacterium, C. daecheongense, C. gambrini, C. gleum, C. joostei, C. jejuense, C. luteum, C. shigense, C. taiwanense, C. ureilyticum and C. vrystaatense. Syst Appl Microbiol 2014; 37:342-350. Oren A, Garrity GM. List of changes in taxonomic opinion no. 21. Notification of changes in taxonomic opinion previously published outside the IJSEM. Int J Syst Evol Microbiol 2015; 65:7-10.
  Notes:
  - Emendation accompanied by the proposal of 1 new species in the genus.
- Chen et al. 2015 Chen XY, Zhao R, Chen ZL, Liu L, Li XD, Li YH. Chryseobacterium polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Chryseobacterium. Antonie Van Leeuwenhoek 2015; 107:403-410. Oren A, Garrity GM. List of changes in taxonomic opinion no. 22. Notification of changes in taxonomic opinion previously published outside the IJSEM. Int J Syst Evol Microbiol 2015; 65:2028-2029.
  Notes:
  - Emendation accompanied by the proposal of 1 new species in the genus.
- Hahnke et al. 2016 Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M. Genome-Based Taxonomic Classification of Bacteroidetes. Front Microbiol 2016; 7:2003. Oren A, Garrity GM. List of changes in taxonomic opinion no. 26. Notification of changes in taxonomic opinion previously published outside the IJSEM. Int J Syst Evol Microbiol 2017; 67:2081-2086.
  Notes:
  - Emendation accompanied by the proposal of 5 new species in the genus.
- Nicholson et al. 2020 Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Bell ME, Holmes B, Steigerwalt AG, Villarma A, Sheth M, Batra D, et al. Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas, eleven species to the genus Kaistella, and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens. Int J Syst Evol Microbiol 2020; 70:4432-4450. Oren A, Garrity GM. Notification list. Notification that new names and new combinations have appeared in volume 70, part 8 of the IJSEM. Int J Syst Evol Microbiol 2020; 70:5602-5608.
  Notes:
  - Emendation accompanied by the removal of 24 species from the genus.

Notes:
- Bernardet et al. (2002) assigned this genus to the family Flavobacteriaceae Reichenbach 1992. Publication: Bernardet JF, Nakagawa Y, Holmes B. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 2002; 52:1049-1070.
- The type species of this genus has alternatively been placed in the genus Flavobacterium Bergey et al. 1923 (Approved Lists 1980). Publication: Holmes B, Owen RJ, Steigerwalt AG, Brenner DJ. Flavobacterium gleum, a new species found in human clinical specimens. Int. J. Syst. Bacteriol. 1984; 34:21-25.
- This taxon name is occasionally misprinted in some sources as: "Chryseobacerium"; "Chyseobacterium".
- This taxon name is occasionally used in plural form as: "Chryseobacteria".
- This taxon was discussed in a meeting of a Taxonomic Subcommittee of the ICSP. Publication: Bowman JP, Hugo C, Bernardet JF. International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Aerobic Bacteroidetes (formerly Flavobacterium and Cytophaga-like bacteria). Minutes of the meeting, 30 July 2014, Montreal, Canada. Int J Syst Evol Microbiol 2017; 67:507-509.
- Recommended reviewers for taxonomic proposals in this group are the corresponding authors of Jeong et al. (2019), Oosthuizen et al. (2019), De Beer et al. (2006), Lee et al. (2020), Bortniak et al. (2019).

Subdivision:

Number of child taxa with a validly published and correct name: 120
Number of child taxa with a validly published name, including synonyms: 124
Total number of child taxa: 144

Child taxa:

Name	Nomenclatural status	Taxonomic status
Chryseobacterium aahli Loch and Faisal 2014	validly published	correct name
Chryseobacterium angstadtii Kirk et al. 2013	validly published	correct name
Chryseobacterium antarcticum (Yi et al. 2005) Kämpfer et al. 2009	validly published	correct name
Chryseobacterium anthropi Kämpfer et al. 2009	validly published	correct name
"Chryseobacterium antibioticum" Dahal et al. 2021	not validly published
Chryseobacterium aquaticum Kim et al. 2008	validly published	correct name
Chryseobacterium aquifrigidense Park et al. 2008	validly published	correct name
Chryseobacterium arachidiradicis Kämpfer et al. 2015	validly published	correct name
Chryseobacterium arachidis Kämpfer et al. 2014	validly published	correct name
Chryseobacterium arothri Campbell et al. 2008	validly published	synonym
Chryseobacterium arthrosphaerae Kämpfer et al. 2010	validly published	correct name
Chryseobacterium artocarpi Venil et al. 2014	validly published	correct name
Chryseobacterium aurantiacum Luo et al. 2018	validly published	correct name
Chryseobacterium aureum Lee et al. 2019	validly published	correct name
Chryseobacterium balustinum (Harrison 1929) Vandamme et al. 1994	validly published	correct name
Chryseobacterium bernardetii Holmes et al. 2013	validly published	correct name
Chryseobacterium binzhouense Meng et al. 2020	validly published	correct name
Chryseobacterium bovis Hantsis-Zacharov et al. 2008	validly published	correct name
Chryseobacterium buanense (Joung et al. 2010) García-López et al. 2020	validly published	correct name
Chryseobacterium caeni Quan et al. 2007	validly published	correct name
Chryseobacterium camelliae Kook et al. 2014	validly published	correct name
Chryseobacterium candidae Indu et al. 2020	validly published	correct name
Chryseobacterium carnipullorum Charimba et al. 2013	validly published	correct name
Chryseobacterium carnis Holmes et al. 2013	validly published	correct name
Chryseobacterium chaponense Kämpfer et al. 2011	validly published	correct name
"Chryseobacterium chengduensis" Wen et al. 2016	not validly published
"Chryseobacterium cheonjiense" Chaudhary et al. 2020	not validly published
"Chryseobacterium chungangensis" Huq 2018	not validly published
Chryseobacterium contaminans Kämpfer et al. 2014	validly published	correct name
Chryseobacterium cucumeris Jeong et al. 2017	validly published	correct name
Chryseobacterium culicis Kämpfer et al. 2010	validly published	correct name
Chryseobacterium daecheongense Kim et al. 2005	validly published	correct name
Chryseobacterium daeguense Yoon et al. 2007	validly published	correct name
Chryseobacterium defluvii Kämpfer et al. 2003	validly published	correct name
Chryseobacterium echinoideorum Lin et al. 2015	validly published	correct name
Chryseobacterium elymi Cho et al. 2011	validly published	correct name
Chryseobacterium endophyticum Lin et al. 2017	validly published	correct name
Chryseobacterium flavum Zhou et al. 2007	validly published	correct name
Chryseobacterium formosense Young et al. 2005	validly published	correct name
"Chryseobacterium formosus" Akter et al. 2015	not validly published
Chryseobacterium frigidisoli Bajerski et al. 2013	validly published	correct name
Chryseobacterium frigidum Kim et al. 2016	validly published	correct name
Chryseobacterium gallinarum Kämpfer et al. 2014	validly published	correct name
Chryseobacterium gambrini Herzog et al. 2008	validly published	correct name
Chryseobacterium geocarposphaerae Kämpfer et al. 2014	validly published	correct name
Chryseobacterium ginsengisoli Nguyen et al. 2013	validly published	correct name
"Chryseobacterium ginsengiterrae" Noh et al. 2017	not validly published
Chryseobacterium ginsengiterrae Hahnke et al. 2017	validly published	correct name
Chryseobacterium ginsenosidimutans Im et al. 2011	validly published	correct name
Chryseobacterium glaciei Pal et al. 2018	validly published	correct name
Chryseobacterium gleum (Holmes et al. 1984) Vandamme et al. 1994	validly published	correct name
Chryseobacterium greenlandense Loveland-Curtze et al. 2010	validly published	synonym
Chryseobacterium gregarium Behrendt et al. 2008	validly published	correct name
Chryseobacterium gwangjuense Park et al. 2013	validly published	correct name
Chryseobacterium hagamense Cho et al. 2011	validly published	correct name
Chryseobacterium haifense Hantsis-Zacharov and Halpern 2007	validly published	correct name
Chryseobacterium halperniae Hahnke et al. 2017	validly published	correct name
Chryseobacterium hispalense Montero-Calasanz et al. 2013	validly published	correct name
Chryseobacterium hispanicum Gallego et al. 2006	validly published	correct name
Chryseobacterium hominis Vaneechoutte et al. 2007	validly published	correct name
Chryseobacterium humi Pires et al. 2010	validly published	correct name
Chryseobacterium hungaricum Szoboszlay et al. 2008	validly published	correct name
Chryseobacterium indologenes (Yabuuchi et al. 1983) Vandamme et al. 1994	validly published	correct name
Chryseobacterium indoltheticum (Campbell and Williams 1951) Vandamme et al. 1994	validly published	correct name
Chryseobacterium jejuense Weon et al. 2008	validly published	correct name
Chryseobacterium jeonii (Yi et al. 2005) Kämpfer et al. 2009	validly published	correct name
Chryseobacterium joostei Hugo et al. 2003	validly published	correct name
Chryseobacterium koreense (Kim et al. 2004) Kämpfer et al. 2009	validly published	correct name
Chryseobacterium kwangjuense Sang et al. 2013	validly published	correct name
Chryseobacterium lactis Holmes et al. 2013	validly published	correct name
Chryseobacterium lacus Zhang et al. 2020	validly published	correct name
Chryseobacterium lathyri Cho et al. 2011	validly published	correct name
Chryseobacterium limigenitum Kämpfer et al. 2015	validly published	correct name
Chryseobacterium lineare Zhao et al. 2017	validly published	correct name
Chryseobacterium luteum Behrendt et al. 2007	validly published	correct name
Chryseobacterium marinum (Lee et al. 2007) Kämpfer et al. 2009	validly published	correct name
"Candidatus Chryseobacterium massiliae" (sic) Greub et al. 2004	misspelling
"Candidatus Chryseobacterium massiliense" corrig. Greub et al. 2004	not validly published
Chryseobacterium meningosepticum (King 1959) Vandamme et al. 1994	validly published	synonym
Chryseobacterium miricola Li et al. 2004	validly published	synonym
Chryseobacterium molle Herzog et al. 2008	validly published	correct name
Chryseobacterium montanum Guo et al. 2016	validly published	correct name
"Chryseobacterium mucoviscidosis" Tetz and Tetz 2018	not validly published
Chryseobacterium mulctrae Yoon et al. 2019	validly published	correct name
Chryseobacterium nakagawai Holmes et al. 2013	validly published	correct name
"Chryseobacterium nematophagum" Page et al. 2019	not validly published
Chryseobacterium nepalense Chaudhary and Kim 2017	validly published	correct name
Chryseobacterium oleae Montero-Calasanz et al. 2014	validly published	correct name
Chryseobacterium oncorhynchi Zamora et al. 2012	validly published	correct name
Chryseobacterium oranimense Hantsis-Zacharov et al. 2008	validly published	correct name
Chryseobacterium pallidum Herzog et al. 2008	validly published	correct name
Chryseobacterium palustre Pires et al. 2010	validly published	correct name
"Chryseobacterium panacis" Singh et al. 2016	not validly published
Chryseobacterium pennipullorum Oosthuizen et al. 2019	validly published	correct name
"Chryseobacterium phocaeense" Abou Abdallah et al. 2019	not validly published
Chryseobacterium phosphatilyticum Jeong et al. 2019	validly published	correct name
Chryseobacterium piperi Strahan et al. 2011	validly published	correct name
Chryseobacterium piscicola Ilardi et al. 2009	validly published	correct name
Chryseobacterium piscium de Beer et al. 2006	validly published	correct name
Chryseobacterium polytrichastri Chen et al. 2015	validly published	correct name
Chryseobacterium populi Bortniak et al. 2019	validly published	correct name
Chryseobacterium profundimaris Xu et al. 2015	validly published	correct name
"Chryseobacterium proteolyticum" Yamaguchi and Yokoe 2000	not validly published
Chryseobacterium psychrotolerans (Ge et al. 2015) Hahnke et al. 2017	validly published	correct name
Chryseobacterium reticulitermitis Zhao et al. 2017	validly published	correct name
Chryseobacterium rhizoplanae Kämpfer et al. 2015	validly published	correct name
Chryseobacterium rhizosphaerae Cho et al. 2011	validly published	correct name
Chryseobacterium rigui Park et al. 2013	validly published	correct name
Chryseobacterium salipaludis Divyasree et al. 2018	validly published	correct name
Chryseobacterium salivictor Kim and Yu 2020	validly published	correct name
Chryseobacterium scophthalmum (Mudarris et al. 1994) Vandamme et al. 1994	validly published	correct name
Chryseobacterium sediminis Kämpfer et al. 2015	validly published	correct name
"Chryseobacterium senegalense" Lo et al. 2016	not validly published
Chryseobacterium shandongense Yang et al. 2015	validly published	correct name
Chryseobacterium shigense Shimomura et al. 2005	validly published	correct name
"Chryseobacterium siluri" Oh et al. 2020	not validly published
Chryseobacterium solani Du et al. 2015	validly published	correct name
Chryseobacterium soldanellicola Park et al. 2006	validly published	correct name
Chryseobacterium soli Weon et al. 2008	validly published	correct name
Chryseobacterium solincola Benmalek et al. 2010	validly published	correct name
Chryseobacterium taeanense Park et al. 2006	validly published	correct name
Chryseobacterium taichungense Shen et al. 2005	validly published	correct name
Chryseobacterium taihuense Wu et al. 2013	validly published	correct name
Chryseobacterium taiwanense Tai et al. 2006	validly published	correct name
Chryseobacterium takakiae Zhao et al. 2015	validly published	correct name
Chryseobacterium taklimakanense (Peng et al. 2009) Holmes et al. 2013	validly published	correct name
Chryseobacterium tenax (O'Sullivan et al. 2006) Hahnke et al. 2017	validly published	correct name
"Candidatus Chryseobacterium timonae" (sic) Drancourt et al. 2004	misspelling
"Candidatus Chryseobacterium timonense" corrig. Drancourt et al. 2004	not validly published
"Chryseobacterium timonianum" Abou Abdallah et al. 2017	not validly published
Chryseobacterium treverense Yassin et al. 2010	validly published	correct name
Chryseobacterium tructae Zamora et al. 2013	validly published	correct name
Chryseobacterium ureilyticum Herzog et al. 2008	validly published	correct name
Chryseobacterium vaccae Lee et al. 2020	validly published	correct name
Chryseobacterium vietnamense Li and Zhu 2012	validly published	correct name
Chryseobacterium viscerum Zamora et al. 2012	validly published	correct name
Chryseobacterium vrystaatense de Beer et al. 2005	validly published	correct name
Chryseobacterium wanjuense Weon et al. 2006	validly published	correct name
Chryseobacterium xinjiangense Zhao et al. 2011	validly published	correct name
Chryseobacterium xixisoli (Feng et al. 2014) Hahnke et al. 2017	validly published	correct name
"Chryseobacterium yeoncheonense" Hoang et al. 2013	not validly published
Chryseobacterium yonginense Joung and Joh 2011	validly published	correct name
Chryseobacterium zeae Kämpfer et al. 2014	validly published	correct name
"Chryseobacterium zhengzhouense" Wang et al. 2016	not validly published

Parent taxon: Weeksellaceae García-López et al. 2020

Assigned by: Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M. Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. Front Microbiol 2019; 10:2083.

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