Name: Jatrophihabitans Madhaiyan et al. 2013

Category: Genus

Proposed as: gen. nov.

Etymology: Ja.tro.phi.ha’bi.tans. N.L. fem. n. Jatropha, scientific name of a botanical genus; L. pres. part. habitans, inhabiting; N.L. masc. n. Jatrophihabitans, inhabitant of Jatropha

Gender: masculine (stem: Jatrophihabitant-)

Type species: Jatrophihabitans endophyticus Madhaiyan et al. 2013

Conduct genome-based taxonomy of genus at TYGS

16S rRNA gene: Analyse FASTA

Valid publication: Madhaiyan M, Hu CJ, Kim SJ, Weon HY, Kwon SW, Ji L. Jatrophihabitans endophyticus gen. nov., sp. nov., an endophytic actinobacterium isolated from a surface-sterilized stem of Jatropha curcas L. Int J Syst Evol Microbiol 2013; 63:1241-1248.

IJSEM list: Euzeby JP. Notification list. Notification that new names and new combinations have appeared in volume 63, part 4 of the IJSEM. Int J Syst Evol Microbiol 2013; 63:2368-2370.

Nomenclatural status: validly published under the ICNP

Taxonomic status: correct name

• Emendations:
  • Kim et al. 2015 Kim SJ, Moon JY, Lim JM, Hamada M, Ahn JH, Weon HY, Suzuki K, Kwon SW. Jatrophihabitans soli sp. nov., isolated from soil. Int J Syst Evol Microbiol 2015; 65:1759-1763. Oren A, Garrity GM. Notification list. Notification that new names and new combinations have appeared in volume 65, part 6 of the IJSEM. Int J Syst Evol Microbiol 2015; 65:2784-2785.
    Notes:
    • ⊕ Emendation accompanied by the proposal of 1 new species in the genus.
    • 😢 The terminology used by the authors is in line with many other taxonomic studies and does not negatively affect their main results; some improvements may nevertheless be possible. Contrasting the term "chemotaxonomic" with "phenotypic" is not recommended. Using the term "phylogenetic data" (or equivalent) for sequence data is not advocated. Whether taxa can have "members" is debatable. See the LPSN phylogeny page for details.
  • Lee et al. 2018 Lee KC, Suh MK, Eom MK, Kim KK, Kim JS, Kim DS, Ko SH, Shin YK, Lee JS. Jatrophihabitans telluris sp. nov., isolated from sediment soil of lava forest wetlands and the emended description of the genus Jatrophihabitans. Int J Syst Evol Microbiol 2018; 68:1107-1111. Oren A, Garrity GM. Notification list. Notification that new names and new combinations have appeared in volume 68, part 4 of the IJSEM. Int J Syst Evol Microbiol 2018; 68:2134-2136.
    Notes:
    • ⊕ Emendation accompanied by the proposal of 1 new species in the genus.
    • 😢 The terminology used by the authors is in line with many other taxonomic studies and does not negatively affect their main results; some improvements may nevertheless be possible. Contrasting the term "chemotaxonomic" with "phenotypic" is not recommended. Using the term "phylogenetic data" (or equivalent) for sequence data is not advocated. See the LPSN phylogeny page for details.
  • Suh et al. 2024 Suh MK, Kim JS, Eom MK, Kim HS, Do HE, Shin YK, Lee JS. Jatrophihabitans cynanchi sp. nov., isolated from rhizosphere soil of Cynanchum wilfordii. Antonie Van Leeuwenhoek 2024; 117:19. Oren A, Göker M. List of changes in taxonomic opinion no. 40. Notification of changes in taxonomic opinion previously published outside the IJSEM. Int J Syst Evol Microbiol 2024; 74:6482.
    Notes:
    • ⊕ Emendation accompanied by the proposal of 1 new species in the genus.

• Notes:
  • 🥇 Nomenclatural type of the family Jatrophihabitantaceae Nouioui et al. 2018. Publication: Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. Genome-Based Taxonomic Classification of the Phylum Actinobacteria. Front Microbiol 2018; 9:2007.
  • 🥇 Nomenclatural type of the order Jatrophihabitantales Salam et al. 2020. Publication: Salam N, Jiao JY, Zhang XT, Li WJ. Update on the classification of higher ranks in the phylum Actinobacteria. Int J Syst Evol Microbiol 2020; 70:1331-1355.
  • 🧕 Salam et al. (2020) assigned this genus to the order Jatrophihabitantales Salam et al. 2020. Publication: Salam N, Jiao JY, Zhang XT, Li WJ. Update on the classification of higher ranks in the phylum Actinobacteria. Int J Syst Evol Microbiol 2020; 70:1331-1355.
  • 🧕 Yilmaz et al. (2014) assigned this genus to the family Frankiaceae Becking 1970 (Approved Lists 1980). Publication: Yilmaz P, Parfrey LW, Yarza P, Gerken J, Pruesse E, Quast C, Schweer T, Peplies J, Ludwig W, Glöckner FO. The SILVA and “all-species living tree project (LTP)” taxonomic frameworks. Nucleic Acids Research 2014; 42(D1):D643-D648.
  • 💁 Taxonomists who have recently focused on this group are the corresponding authors of Suh et al. (2024). Editors in search of reviewers are advised to consider additional criteria such as whether a taxon is covered by one of the ICSP subcommittees.
  • 🎰 The BRCs most frequently used for deposits in this group are: DSM: 4; KCTC: 4; NBRC: 3; KACC: 2; NRRL: 1; CPCC: 1; JCM: 1.

Subdivision:

Number of child taxa with a validly published and correct name: 6
Number of child taxa with a validly published name, including synonyms: 6
Total number of child taxa: 7

• Child taxa:

  • Name	Nomenclatural status	Taxonomic status
    Jatrophihabitans cynanchi Suh et al. 2024	validly published under the ICNP	correct name
    Jatrophihabitans endophyticus Madhaiyan et al. 2013	validly published under the ICNP	correct name
    Jatrophihabitans fulvus Jin et al. 2015	validly published under the ICNP	correct name
    Jatrophihabitans huperziae Gong et al. 2016	validly published under the ICNP	correct name
    "Jatrophihabitans lederbergiae" Nouioui et al. 2024	not validly published	preferred name
    Jatrophihabitans soli Kim et al. 2015	validly published under the ICNP	correct name
    Jatrophihabitans telluris Lee et al. 2018	validly published under the ICNP	correct name

Parent taxon: Jatrophihabitantaceae Nouioui et al. 2018

Assigned by: Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. Genome-Based Taxonomic Classification of the Phylum Actinobacteria. Front Microbiol 2018; 9:2007.

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Record number: 518334