Name: Sandarakinorhabdus Gich and Overmann 2006

Category: Genus

Proposed as: gen. nov.

Etymology: San.da.ra’ki.no.rhab’dus. Gr. masc./fem. adj. sandarakinos, of orange colour; Gr. fem. n. rhabdos, rod; N.L. fem. n. Sandarakinorhabdus, orange-coloured rod

Gender: feminine (stem: Sandarakinorhabd-)

Type species: Sandarakinorhabdus limnophila Gich and Overmann 2006

Conduct genome-based taxonomy of genus at TYGS

16S rRNA gene: Analyse FASTA

Valid publication: Gich F, Overmann J. Sandarakinorhabdus limnophila gen. nov., sp. nov., a novel bacteriochlorophyll a-containing, obligately aerobic bacterium isolated from freshwater lakes. Int J Syst Evol Microbiol 2006; 56:847-854.

IJSEM list: Euzeby JP. Notification list. Notification that new names and new combinations have appeared in volume 56, part 4 of the IJSEM. Int J Syst Evol Microbiol 2006; 56:1461-1462.

Nomenclatural status: validly published under the ICNP

Taxonomic status: correct name

• Emendations:
  • Kim et al. 2016 Kim M, Kang O, Zhang Y, Ren L, Chang X, Jiang F, Fang C, Zheng C, Peng F. Sphingoaurantiacus polygranulatus gen. nov., sp. nov., isolated from high-Arctic tundra soil, and emended descriptions of the genera Sandarakinorhabdus, Polymorphobacter and Rhizorhabdus and the species Sandarakinorhabdus limnophila, Rhizorhabdus argentea and Sphingomonas wittichii. Int J Syst Evol Microbiol 2016; 66:91-100. Oren A, Garrity GM. Notification list. Notification that new names and new combinations have appeared in volume 66, part 1 of the IJSEM. Int J Syst Evol Microbiol 2016; 66:1607-1611.
    Notes:
    • The terminology used by the authors is in line with many other taxonomic studies and does not negatively affect their main results; some improvements may nevertheless be possible. Contrasting the term "chemotaxonomic" with "phenotypic" is not recommended. Using the term "phylogenetic data" (or equivalent) for sequence data is not advocated. See the LPSN phylogeny page for details.
  • Cai et al. 2018 Cai H, Cui H, Zeng Y, An M, Jiang H. Sandarakinorhabdus cyanobacteriorum sp. nov., a novel bacterium isolated from cyanobacterial aggregates in a eutrophic lake. Int J Syst Evol Microbiol 2018; 68:730-735. Oren A, Garrity GM. Notification list. Notification that new names and new combinations have appeared in volume 68, part 3 of the IJSEM. Int J Syst Evol Microbiol 2018; 68:1823-1824.
    Notes:
    • Emendation accompanied by the proposal of 1 new species in the genus.
    • The terminology used by the authors is in line with many other taxonomic studies and does not negatively affect their main results; some improvements may nevertheless be possible. Contrasting the term "chemotaxonomic" with "phenotypic" is not recommended. Using the term "phylogenetic data" (or equivalent) for sequence data is not advocated. See the LPSN phylogeny page for details.

• Notes:
  • Kim et al. (2016) assigned this genus to the family Sphingomonadaceae Kosako et al. 2000. Publication: Kim M, Kang O, Zhang Y, Ren L, Chang X, Jiang F, Fang C, Zheng C, Peng F. Sphingoaurantiacus polygranulatus gen. nov., sp. nov., isolated from high-Arctic tundra soil, and emended descriptions of the genera Sandarakinorhabdus, Polymorphobacter and Rhizorhabdus and the species Sandarakinorhabdus limnophila, Rhizorhabdus argentea and Sphingomonas wittichii. Int J Syst Evol Microbiol 2016; 66:91-100.
  • The phylogenomic assignment score of this taxon is 0.00907 (N = 3).
  • The BRCs most frequently used for deposits in this group are: NBRC: 2; LMG: 1; CECT: 1; CGMCC: 1; DSM: 1.

Subdivision:

Number of child taxa with a validly published and correct name: 4
Number of child taxa with a validly published name, including synonyms: 4
Total number of child taxa: 4

• Child taxa:

  • Name	Nomenclatural status	Taxonomic status
    Sandarakinorhabdus cyanobacteriorum Cai et al. 2018	validly published under the ICNP	correct name
    Sandarakinorhabdus limnophila Gich and Overmann 2006	validly published under the ICNP	correct name
    Sandarakinorhabdus oryzae Cho and Whang 2021	validly published under the ICNP	correct name
    Sandarakinorhabdus rubra Cho and Whang 2021	validly published under the ICNP	correct name

Parent taxon: Sphingosinicellaceae Hördt et al. 2020

Assigned by: Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 2020; 11:468.

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Record number: 516549