Name: Pannonibacter phragmitetus Borsodi et al. 2003

Category: Species

Proposed as: sp. nov.

Etymology: N.L. masc. adj. phragmitetus, of the plant association Scirpo-Phragmitetum, the habitat of the micro-organism

Gender: masculine

Type strains: C6-19; DSM 14782; NCAIM B.02025

See detailed strain information at

Conduct genome-based taxonomy at

16S rRNA gene: AJ400704 Analyse FASTA

Valid publication: Borsodi AK, Micsinai A, Kovacs G, Toth E, Schumann P, Kovacs AL, Boddi B, Marialigeti K. Pannonibacter phragmitetus gen. nov., sp. nov., a novel alkalitolerant bacterium isolated from decomposing reed rhizomes in a Hungarian soda lake. Int J Syst Evol Microbiol 2003; 53:555-561.

IJSEM list: Euzeby JP. Notification list. Notification that new names and new combinations have appeared in volume 53, part 2 of the IJSEM. Int J Syst Evol Microbiol 2003; 53:939-940.

Nomenclatural status: validly published

Taxonomic status: correct name

Risk group: 1

• Emendations:
  • Hördt et al. 2020 Hördt A, García-López M, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Göker M. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front. Microbiol. 2020; 11:468.
    Notes:
    • As of 2020-04-15 this emendation was not yet included in an IJSEM List of Changes in Taxonomic Opinion.
    • The genome of the type strain was sequenced as part of the GEBA (Genomic Encyclopedia of Bacteria and Archaea) project.

• Notes:
  • Nomenclatural type of the genus Pannonibacter Borsodi et al. 2003. Publication: Borsodi AK, Micsinai A, Kovacs G, Toth E, Schumann P, Kovacs AL, Boddi B, Marialigeti K. Pannonibacter phragmitetus gen. nov., sp. nov., a novel alkalitolerant bacterium isolated from decomposing reed rhizomes in a Hungarian soda lake. Int J Syst Evol Microbiol 2003; 53:555-561.
  • The 16S rRNA gene sequence data, DNA-DNA hybridization results, G+C content determinations, cellular fatty acid analysis and biochemical characterizations prove that strains of Achromobacter groups B and E belong to Pannonibacter phragmitetus (i.e. the three taxa represent a single species). Whilst Pannonibacter phragmitetus was described in 2003 from a Hungarian soda lake, it had been observed in human blood cultures in the UK since 1975. Publication: Holmes B, Segers P, Coenye T, Vancanneyt M, Vandamme P. Pannonibacter phragmitetus, described from a Hungarian soda lake in 2003, had been recognized several decades earlier from human blood cultures as Achromobacter groups B and E. Int J Syst Evol Microbiol 2006; 56:2945-2948.

Parent taxon: Pannonibacter Borsodi et al. 2003

Assigned by: Borsodi AK, Micsinai A, Kovacs G, Toth E, Schumann P, Kovacs AL, Boddi B, Marialigeti K. Pannonibacter phragmitetus gen. nov., sp. nov., a novel alkalitolerant bacterium isolated from decomposing reed rhizomes in a Hungarian soda lake. Int J Syst Evol Microbiol 2003; 53:555-561.

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