Species Atopobium fossor

Name: Atopobium fossor (Bailey and Love 1986) Kageyama et al. 1999

Category, proposed as: species, comb. nov.

Basonym: Eubacterium fossor Bailey and Love 1986

Etymology: fos’sor. L. masc. n. fossor, a digger, delver (nominative in apposition)

Pronunciation (Latin), gender: a-to-PO-bi-um FOS-sor, neuter

Type strain: ATCC 43386; CIP 106638; DSM 15642; JCM 9981; NCTC 11919; VPB 2127

See detailed strain information at

Conduct genome-based taxonomy at

16S rRNA gene: AB015945 Analyse FASTA

Effective publication: Kageyama A, Benno Y, Nakase T. Phylogenic and phenotypic evidence for the transfer of Eubacterium fossor to the genus Atopobium as Atopobium fossor comb. nov. Microbiol Immunol 1999; 43:389-395. 🇯🇵

IJSEM list: Anonymous. Validation list no. 71. Validation of publication of new names and new combinations previously effectively published outside the IJSB. Int J Syst Bacteriol 1999; 49:1325-1326.

Nomenclatural status: validly published under the ICNP

Taxonomic status: correct name (and explicitly recommended for medical use)

Risk group: 2

• Synonyms:

  • Name	Kind
    Eubacterium fossor Bailey and Love 1986	homotypic synonym, validly published under the ICNP

• Emendations:
  • Nouioui et al. 2018 Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. Genome-Based Taxonomic Classification of the Phylum Actinobacteria. Front Microbiol 2018; 9:2007. 🇩🇪 Oren A, Garrity GM. List of changes in taxonomic opinion no. 29. Notification of changes in taxonomic opinion previously published outside the IJSEM. Int J Syst Evol Microbiol 2019; 69:13-32.
    Notes:
    • 🧍 The genome of the type strain was sequenced as part of the GEBA (Genomic Encyclopedia of Bacteria and Archaea) project.

• Notes:
  • 📧 The e-mail address of the corresponding author given in the effective publication is not functional any more.
  • 🧬 The phylogenomic assignment score of this taxon is 0.21073 (N = 8).
  • 😷 The risk group for Canada has been imported on 2024-02-27. The full classification is: risk group = 2, note = "Animal classification RG: 1 - Security sensitive biological agent: No - Terrestrial animal pathogen under Canadian Food Inspection Agency authority: No - Containment level: Containment Level 2". — The risk group for Swiss Confederation has been imported on 2024-02-01. The full classification is: risk group = 2. — The risk group for Germany has been imported on 2026-08-13. The full classification is: risk group = 2, note = "t". — If in doubt, use the risk group given in the regulations for your country and, if these are not available, use the risk group given in the catalogue of the culture collection from which you have obtained or intend to obtain the strain.
  • 🎓 Name mentioned 1 time in PubMed until 2026-06-11.
  • 🙆 This name is on the List of Recommended Names for bacteria of medical importance (LoRN) as the name to be applied to this species. The name is on LoRN because of the recorded risk group of the species itself.

Parent taxon: Atopobium Collins and Wallbanks 1993

Assigned by: Kageyama A, Benno Y, Nakase T. Phylogenic and phenotypic evidence for the transfer of Eubacterium fossor to the genus Atopobium as Atopobium fossor comb. nov. Microbiol Immunol 1999; 43:389-395. 🇯🇵

Linking: To permanently link to this page, use https://doi.org/10.83108/rn.773537Copy to clipboardLink copied to clipboard

Record number: 773537