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Species Sphingobium yanoikuyae
Name: Sphingobium yanoikuyae (Yabuuchi et al. 1990) Takeuchi et al. 2001
Basonym: Sphingomonas yanoikuyae Yabuuchi et al. 1990
Etymology: ya.noi.ku’yae. N.L. gen. fem. n. yanoikuyae, of Yano Ikuya, named in honor of Professor Ikuya Yano, the Japanese bacteriologist who first recognized the second major spot of alkaline-stable glycolipid (SGL-1', now known as galacturonosyl ceramide) on TLC.
Type strain: ATCC 51230; CCUG 28380; CCUG 31205; CIP 106726; DSM 7462; GIFU 9882; HAMBI 1842; IFO 15102; JCM 7371; LMG 11252; NBRC 15102
See detailed strain information at
Conduct genome-based taxonomy at
16S rRNA gene:
D16145
Analyse
FASTA
Valid publication:
Takeuchi M, Hamana K, Hiraishi A. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 2001; 51:1405-1417. 
IJSEM list:
Anonymous. Notification list. Notification that new names and new combinations have appeared in volume 51, part 4 of the IJSEM. Int J Syst Evol Microbiol 2001; 51:1621-1623.
Nomenclatural status: validly published under the ICNP
Taxonomic status: correct name
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Synonyms:
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Name Kind Sphingomonas yanoikuyae Yabuuchi et al. 1990 homotypic synonym, validly published under the ICNP
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Emendations:
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Hördt et al. 2020
Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 2020; 11:468.
Oren A, Garrity GM. List of changes in taxonomic opinion no. 32. Notification of changes in taxonomic opinion previously published outside the IJSEM. Int J Syst Evol Microbiol 2020; 70:4061-4090.
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Hördt et al. 2020
Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M. Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria. Front Microbiol 2020; 11:468.
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Notes:
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🥇 Nomenclatural type of the genus Sphingobium Takeuchi et al. 2001.
Publication:
Takeuchi M, Hamana K, Hiraishi A. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 2001; 51:1405-1417.
- 😷 The risk group for Canada has been imported on 2024-02-27. The full classification is: risk group = 2, note = "Animal classification RG: 1 - Security sensitive biological agent: No - Terrestrial animal pathogen under Canadian Food Inspection Agency authority: No - Containment level: Containment Level 2". — The risk group for Germany has been imported on 2023-10-29. The full classification is: risk group = 1, note = "+". — If in doubt, use the risk group given in the regulations for your country and, if these are not available, use the risk group given in the catalogue of the culture collection from which you have obtained or intend to obtain the strain.
- 🎓 Name mentioned 59 times in PubMed until 2024-03-27.
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🧍 According to Rules 27(3) and 30, this name is not validly published because the effective publication makes no reference to the deposit of the type strain in any publicly accessible service collection, but deposits in at least two recognized culture collections in different countries are documented. According to the Judicial Opinion 81, Sphingobium yanoikuyae (Yabuuchi et al. 1990) Takeuchi et al. 2001 is to be considered to be validly published.
Publication:
Euzeby JP, Tindall BJ. Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an opinion. Int J Syst Evol Microbiol 2004; 54:293-301.
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🥇 Nomenclatural type of the genus Sphingobium Takeuchi et al. 2001.
Publication:
Takeuchi M, Hamana K, Hiraishi A. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 2001; 51:1405-1417.
Parent taxon: Sphingobium Takeuchi et al. 2001
Assigned by:
Takeuchi M, Hamana K, Hiraishi A. Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analyses. Int J Syst Evol Microbiol 2001; 51:1405-1417.
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Record number: 780991
This LPSN page was printed on 2024-11-29 10:29:20