Name: Alicyclobacillus Wisotzkey et al. 1992

Category: Genus

Proposed as: gen. nov.

Etymology: A.li.cy.clo.ba.cil.lus. Gr. adj. aliphos, fat; Gr. masc. n. kyklos, circle; L. masc. n. bacillus, a little staff, rod; N.L. masc. n. Alicyclobacillus, small rod containing circular fatty acids (ω-alicyclic fatty acids)

Gender: masculine (stem: Alicyclobacill-)

Type species: Alicyclobacillus acidocaldarius (Darland and Brock 1971) Wisotzkey et al. 1992

Conduct genome-based taxonomy of genus at TYGS

16S rRNA gene: Analyse FASTA

Valid publication: Wisotzkey JD, Jurtshuk PJ, Fox GE, Deinhard G, Poralla K. Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 1992; 42:263-269.

IJSEM list: Anonymous. Validation list no. 42. Validation of publication of new names and new combinations previously effectively published outside the IJSB. Int J Syst Bacteriol 1992; 42:511.

Nomenclatural status: validly published under the ICNP

Taxonomic status: correct name

Risk group: 1

• Emendations:
  • Goto et al. 2003 Goto K, Mochida K, Asahara M, Suzuki M, Kasai H, Yokota A. Alicyclobacillus pomorum sp. nov., a novel thermo-acidophilic, endospore-forming bacterium that does not possess omega-alicyclic fatty acids, and emended description of the genus Alicyclobacillus. Int J Syst Evol Microbiol 2003; 53:1537-1544. Euzeby JP. Notification list. Notification that new names and new combinations have appeared in volume 53, part 5 of the IJSEM. Int J Syst Evol Microbiol 2004; 54:3-6.
    Notes:
    • ⊕ Emendation accompanied by the proposal of 1 new species in the genus.
  • Karavaiko et al. 2005 Karavaiko GI, Bogdanova TI, Tourova TP, Kondrat'eva TF, Tsaplina IA, Egorova MA, Krasil'nikova EN, Zakharchuk LM. Reclassification of 'Sulfobacillus thermosulfidooxidans subsp. thermotolerans' strain K1 as Alicyclobacillus tolerans sp. nov. and Sulfobacillus disulfidooxidans Dufresne et al. 1996 as Alicyclobacillus disulfidooxidans comb. nov., and emended description of the genus Alicyclobacillus. Int J Syst Evol Microbiol 2005; 55:941-947. Euzeby JP. Notification list. Notification that new names and new combinations have appeared in volume 55, part 2 of the IJSEM. Int J Syst Evol Microbiol 2005; 55:1399-1402.
    Notes:
    • 📧 The e-mail address of the corresponding author given in the associated publication is not functional any more.
    • ⊕ Emendation accompanied by the proposal of 2 new species in the genus.
    • 😢 The terminology used by the authors is in line with many other taxonomic studies and does not negatively affect their main results; some improvements may nevertheless be possible. Using the term "phylogenetic data" (or equivalent) for sequence data is not advocated. Whether taxa can have "members" is debatable. See the LPSN phylogeny page for details.

• Notes:
  • 🥇 Nomenclatural type of the class Alicyclobacillia Chuvochina et al. 2024. Publication: Chuvochina M, Mussig AJ, Chaumeil PA, Skarshewski A, Rinke C, Parks DH, Hugenholtz P. Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes. FEMS Microbiol Lett 2023; 0:0.
  • 🥇 Nomenclatural type of the family Alicyclobacillaceae da Costa and Rainey 2010. Publication: da Costa MS, Rainey FA. Family II. Alicyclobacillaceae fam. nov. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, K.-H. S, Whitman WB (eds), Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3 (The Firmicutes), Springer, New York, 2009, p. 229.
  • 🥇 Nomenclatural type of the order Alicyclobacillales Chuvochina et al. 2024. Publication: Chuvochina M, Mussig AJ, Chaumeil PA, Skarshewski A, Rinke C, Parks DH, Hugenholtz P. Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes. FEMS Microbiol Lett 2023; 0:0.
  • 🧕 Cavalier-Smith and Chao (2020) assigned this genus to the class "Bacillia" Cavalier-Smith 2020. Publication: Cavalier-Smith T, Chao EE. Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria). Protoplasma 2020; 257:621-753.
  • 🧕 Chuvochina et al. (2023) assigned this genus to the class Alicyclobacillia Chuvochina et al. 2024. Publication: Chuvochina M, Mussig AJ, Chaumeil PA, Skarshewski A, Rinke C, Parks DH, Hugenholtz P. Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes. FEMS Microbiol Lett 2023; 0:0.
  • 🧕 Chuvochina et al. (2023) assigned this genus to the order Alicyclobacillales Chuvochina et al. 2024. Publication: Chuvochina M, Mussig AJ, Chaumeil PA, Skarshewski A, Rinke C, Parks DH, Hugenholtz P. Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes. FEMS Microbiol Lett 2023; 0:0.
  • 🚋 The type species of this genus has alternatively been placed in the genus Bacillus Cohn 1872 (Approved Lists 1980). Publication: Darland G, Brock TD. Bacillus acidocaldarius sp. nov., an acidophilic thermophilic spore-forming bacterium. Journal of General Bacteriology 1971; 67:9-15.
  • 🙄 This taxon name is occasionally misprinted (or affected by an OCR error) in some sources as: "Alicyclobaciffus"; "Alicyclobacilus"; "Alicyclobncillus"; "Alicyclobucillus"; "Alicycrobacillus"; "Alicylobacillus"; "Allcyclobacillua".
  • 💁 Taxonomists who have recently focused on this group are the corresponding authors of Goto et al. (2003). Editors in search of reviewers are advised to consider additional criteria such as whether a taxon is covered by one of the ICSP subcommittees.
  • 🎰 The BRCs most frequently used for deposits in this group are: DSM: 25; NBRC: 15; JCM: 13; ATCC: 7; NCIMB: 5; KCTC: 5; CGMCC: 5; CIP: 4; NRIC: 3; IFO: 2.
  • 😷 The risk group for Canada has been imported on 2024-02-27. The full classification is: risk group = 1, note = "Animal classification RG: 1 - Security sensitive biological agent: No - Terrestrial animal pathogen under Canadian Food Inspection Agency authority: No - Containment level: Containment Level 1". — The risk group for Taiwan has been imported on 2024-11-03. The full classification is: risk group = 1, note = "P650 = v". — If in doubt, use the risk group given in the regulations for your country and, if these are not available, use the risk group given in the catalogue of the culture collection from which you have obtained or intend to obtain the strain.
  • 🧍 Albuquerque et al. have isolated four acidophilic, slightly thermophilic or thermophilic Gram-positive strains (strains FR-3, FR-6, FR-1b and FR-11) from solfataric soil at Furnas on the Island of Sao Miguel in the Azores. Phylogenetic analysis of the 16S rRNA gene sequence showed that these organisms represented two novel species of the genus Alicyclobacillus Wisotzkey et al. 1992. Based on the distinct biochemical and chemotaxonomic characteristics, the name Alicyclobacillus hesperidum Albuquerque et al. 2000 is proposed for the species represented by strains FR-11 and FR-1b. The isolates FR-3 and FR-6 cannot be distinguished from the type strain of Alicyclobacillus acidocaldarius (Darland and Brock 1971) Wisotzkey et al. 1992. So, a formal name for this new genomic species ("Alicyclobacillus genomic species 1") is not proposed. Publication: Albuquerque L, Rainey FA, Chung AP, Sunna A, Nobre MF, Grote R, Antranikian G, da Costa MS. Alicyclobacillus hesperidum sp. nov. and a related genomic species from solfataric soils of Sao Miguel in the Azores. Int J Syst Evol Microbiol 2000; 50:451-457.

Subdivision:

Number of child taxa with a validly published and correct name: 29
Number of child taxa with a validly published name, including synonyms: 31
Total number of child taxa: 34

• Child taxa:

  • Name	Nomenclatural status	Taxonomic status
    Alicyclobacillus acidiphilus Matsubara et al. 2002	validly published under the ICNP	correct name
    Alicyclobacillus acidocaldarius (Darland and Brock 1971) Wisotzkey et al. 1992	validly published under the ICNP	correct name
    Alicyclobacillus acidoterrestris (Deinhard et al. 1988) Wisotzkey et al. 1992	validly published under the ICNP	correct name
    Alicyclobacillus aeris Guo et al. 2009	validly published under the ICNP	correct name
    Alicyclobacillus cellulosilyticus Kusube et al. 2014	validly published under the ICNP	correct name
    Alicyclobacillus consociatus Glaeser et al. 2013	validly published under the ICNP	synonym
    Alicyclobacillus contaminans Goto et al. 2007	validly published under the ICNP	correct name
    Alicyclobacillus curvatus Jiang et al. 2022	validly published under the ICNP	correct name
    Alicyclobacillus cycloheptanicus (Deinhard et al. 1988) Wisotzkey et al. 1992	validly published under the ICNP	correct name
    Alicyclobacillus dauci Nakano et al. 2015	validly published under the ICNP	correct name
    Alicyclobacillus disulfidooxidans (Dufresne et al. 1996) Karavaiko et al. 2005	validly published under the ICNP	correct name
    Alicyclobacillus fastidiosus Goto et al. 2007	validly published under the ICNP	correct name
    "Alicyclobacillus ferripilum" Watanabe et al. 2014	not validly published	preferred name (not correct name)
    Alicyclobacillus ferrooxydans Jiang et al. 2008	validly published under the ICNP	correct name
    Alicyclobacillus fodiniaquatilis Zhang et al. 2015	validly published under the ICNP	correct name
    Alicyclobacillus fructus Roth et al. 2021	validly published under the ICNP	correct name
    Alicyclobacillus herbarius Goto et al. 2002	validly published under the ICNP	correct name
    Alicyclobacillus hesperidum Albuquerque et al. 2000	validly published under the ICNP	correct name
    Alicyclobacillus kakegawensis Goto et al. 2007	validly published under the ICNP	correct name
    Alicyclobacillus macrosporangiidus Goto et al. 2007	validly published under the ICNP	correct name
    "Alicyclobacillus mali" Matsubara et al. 2002	not validly published	preferred name (not correct name)
    "Alicyclobacillus mali" Aulitto et al. 2021	not validly published	preferred name (not correct name)
    Alicyclobacillus mali Roth et al. 2021	validly published under the ICNP	correct name
    Alicyclobacillus mengziensis Jiang et al. 2022	validly published under the ICNP	correct name
    Alicyclobacillus montanus López et al. 2018	validly published under the ICNP	correct name
    Alicyclobacillus pohliae Imperio et al. 2008	validly published under the ICNP	synonym
    Alicyclobacillus pomorum Goto et al. 2003	validly published under the ICNP	correct name
    Alicyclobacillus sacchari Goto et al. 2007	validly published under the ICNP	correct name
    Alicyclobacillus sendaiensis Tsuruoka et al. 2003	validly published under the ICNP	correct name
    Alicyclobacillus shizuokensis Goto et al. 2007	validly published under the ICNP	correct name
    Alicyclobacillus suci Roth et al. 2021	validly published under the ICNP	correct name
    Alicyclobacillus tengchongensis Kim et al. 2016	validly published under the ICNP	correct name
    Alicyclobacillus tolerans Karavaiko et al. 2005	validly published under the ICNP	correct name
    Alicyclobacillus vulcanalis Simbahan et al. 2004	validly published under the ICNP	correct name

Parent taxon: Alicyclobacillaceae da Costa and Rainey 2010

Assigned by: da Costa MS, Rainey FA. Family II. Alicyclobacillaceae fam. nov. In: De Vos P, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, K.-H. S, Whitman WB (eds), Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3 (The Firmicutes), Springer, New York, 2009, p. 229.

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Record number: 515075