All names cited in the List of Prokaryotic names with Standing in Nomenclature
Introduction
List A - C
List D - L
List M - R
List S - Z
I - The taxonomic categories above the rank of class are not covered by the Rules of the Bacteriological Code (1990 Revision) [Rule 5b]. However, two divisions were included in the Approved Lists of Bacterial Names, two divisions were cited on Validation List no. 15, several taxa proposed by Cavalier-Smith (Int. J. Syst. Evol. Microbiol., 2002, 52, 7-76) appear in the Notification List published in the March 2002 issue of the IJSEM (Int. J. Syst. Evol. Microbiol., 2002, 52, 293-295), nine phyla (= divisions) are cited in Validation List no. 85, one phylum is cited in the July 2003 issue of the IJSEM, one phylum appears in Validation List 98, one phylum appears in Validation List 106, two phyla are proposed in the 2009 issues of the IJSEM, one phylum is cited on Validation List 132, one phylum is cited in the June 2010 issue of the IJSEM, one phylum is cited in the June 2011 issue of the IJSEM, and 7 phyla are cited on Validation List 143. So, names of taxa above the rank of class are listed in the files List A - C, List D - L, List M - R, and List S - Z.
II - The category Candidatus is not covered by the Rules of the Bacteriological Code (1990 Revision). During the 1996 meetings in Jerusalem, the Judicial Commission unanimously voted to recommend to the ICSB (now ICSP) that this taxonomic category be adopted as an Appendix to the Bacteriological Code (1990 Revision). Thereafter, the proposal of the Judicial Commission was unanimously accepted by the ICSB (now ICSP). Consequently, Candidatus names published in the IJSB/IJSEM are included in the files List A - C, List D - L, List M - R, and List S - Z.
III - The following names do not meet the criteria required by the Bacteriological Code (1990 Revision), or they are incorrect, or they are rejected. However, they have been listed in the files List A - C, List D - L, List M - R, and List S - Z.
Acetobacter liquefaciens (Asai 1935) Yamada and Tahara 1984, Actinomyces pyogenes (Glage 1903) Collins and Jones 1983, Bacillus pallidus Zhou et al. 2008, Bacteriolyticum Piñeiro et al. 2008, Bacteriolyticum stolpii (Seidler et al. 1972) Piñeiro et al. 2008, Bryantella Wolin et al. 2004, Bryantella formatexigens Wolin et al. 2004, Budvicia Aldová et al. 1985, Budvicia aquatica Aldová et al. 1985, Burkholderia cocovenenans (van Damme et al. 1960) Zhao et al. 1995, Burkholderia glathei (Zolg and Ottow 1975) Viallard et al. 1998, Burkholderia pyrrocinia (Imanaka et al. 1965) Viallard et al. 1998, Chlorobaculum chlorovibrioides (Gorlenko et al. 1974) Imhoff 2003, Citrobacter diversus (Burkey 1928) Werkman and Gillen 1932 (Approved Lists 1980) (rejected name), Clostridium piliforme (ex Tyzzer 1917) Duncan et al. 1993, Clostridium putrificum (Trevisan 1889) Reddish and Rettger 1922 (Approved Lists 1980) (rejected name), Corynebacterium liquefaciens (Okabayashi and Masuo 1960) Lanéelle et al. 1980, Crabtreella Xie and Yokota 2006, Crabtreella saccharophila Xie and Yokota 2006, Crinalium (ex Crow 1927) De Winder et al. 1991, Crinalium epipsammum De Winder et al. 1991, Eggerthella Kageyama et al. 1999, Eggerthella lenta (Eggerth 1935) Kageyama et al. 1999, Enterobacteraceae (ex Lapage 1979) Lapage 1982, Enterobacteriaceae (ex Rahn 1937) Ewing et al. 1980, Faenia Kurup and Agre 1983 (see Rule 10a), Faenia rectivirgula Kurup and Agre 1983 (illegitimate genus name), Flavobacterium sasangense Yoon et al. 2009, Frondicola Zhang et al. 2007, Frondicola australicus Zhang et al. 2007, Geobacteraceae Garrity et al. 2006, Goodfellowia Labeda and Kroppenstedt 2006, Goodfellowia coeruleoviolacea (Preobrazhenskaya and Terekhova 1987) Labeda and Kroppenstedt 2006, Gordonia amarae (Lechevalier and Lechevalier 1974) Ruimy et al. 1995, Halorubrobacterium Kamekura and Dyall-Smith 1996, Halorubrobacterium coriense corrig. Kamekura and Dyall-Smith 1996, Halorubrobacterium distributum (Zvyagintseva and Tarasov 1989) Kamekura and Dyall-Smith 1996, Halorubrobacterium lacusprofundi (Franzmann et al. 1989) Kamekura and Dyall-Smith 1996, Halorubrobacterium saccharovorum (Tomlinson and Hochstein 1977) Kamekura and Dyall-Smith 1996, Halorubrobacterium sodomense (Oren 1983) Kamekura and Dyall-Smith 1996, Halovibrio denitrificans Sorokin et al. 2006, Holospora (ex Hafkine 1890) Preer and Preer 1982, Holospora obtusa (ex Hafkine 1890) Preer and Preer 1982, Holospora undulata (ex Hafkine 1890) Preer and Preer 1982, Kocuria erythromyxa (Brooks and Murray 1981) Rainey et al. 1997, Koserella Hickman-Brenner et al. 1985, Koserella trabulsii Hickman-Brenner et al. 1985, Lactobacillus acidophilus (Moro 1900) Hansen and Mocquot 1970, Lactobacillus zeae (ex Kuznetsov 1959) Dicks et al. 1996, nom. rev., comb. nov., Leifsonia cynodontis (Davis et al. 1984) Suzuki et al. 2000, Limnothrix, Limnothrix redekei (Van Goor) Meffert 1988 emend. Suda et al. 2002, Marivita byunsanensis (Yoon et al. 2010) Yoon et al. 2012, Methanosaeta Patel and Sprott 1990, Methanosaeta concilii (Patel 1985) Patel and Sprott 1990, Methanosaeta harundinacea Ma et al. 2006, Methanosaeta thermophila (Kamagata et al. 1992) Boone and Kamagata 1998, Methanosaeta thermoacetophila (Nozhevnikova and Chudina 1988) Patel and Sprott 1990, Methanosarcina methanica (Smit 1930) Kluyver and van Niel 1936 (Approved Lists 1980) (rejected name), Methylothermus Tsubota et al. 2005, Methylothermus thermalis Tsubota et al. 2005, Microcyclus Ørskov 1928 (Approved Lists 1980), Microcyclus aquaticus Ørskov 1928 (Approved Lists 1980), Microcystis Kützing, Microcystis aeruginosa Otsuka et al. 2001, Micromonas Murdoch and Shah 2000, Micromonas micros (Prévot 1933) Murdoch and Shah 2000, Microsphaera Yoshimi et al. 1996, Microsphaera multipartita Yoshimi et al. 1996, Microsphaeraceae Rainey et al. 1997, Mycobacteriales Cavalier-Smith 2002, Mycobacterium chlorophenolicum (Apajalahti et al. 1986) Briglia et al. 1994, Mycoplasma coccoides (Schilling 1928) Neimark et al. 2005, Mycoplasma sualvi Gourlay et al. 1983, Nautilia profundicola Smith et al. 2008, sp. nov., Neisseria weaveri Andersen et al. 1993, Odoribacter denticanis Hardham et al. 2008, Pasteurella gallicida (Burrill 1883) Buchanan 1925 (Approved Lists 1980) (rejected name), Pelczaria Poston 1994 (rejected name), Pelczaria aurantia Poston 1994 (rejected name), Peredibacteraceae Piñeiro et al. 2008, Photobacterium indicum (Johnson and Weisrock 1969) Xie and Yokota 2004, Pirella marina Schlesner 1987, Pirella Schlesner and Hirsch 1984, Pirella staleyi Schlesner and Hirsch 1984, Planktothrix Anagnostidis and Komárek 1988 emend. Suda et al. 2002, Planktothrix agardhii (Gomont) Anagnostidis and Komárek 1988 emend. Suda et al. 2002, Planktothrix mougeotii Suda et al. 2002, Planktothrix pseudagardhii Suda and Watanabe 2002, Planktothrix rubescens (D.C. ex Gomont) Anagnostidis and Komárek 1988 emend. Suda et al. 2002, Prochlorococcus marinus subsp. marinus Chisholm et al. 1992, Prochlorococcus marinus subsp. pastoris Rippka et al. 2000, Reichenbachia Nedashkovskaya et al. 2003, Reichenbachia agariperforans Nedashkovskaya et al. 2003, Rhizomonas van Bruggen et al. 1990 (rejected name), Rhizomonas suberifaciens van Bruggen et al. 1990, Roseomonas rosea (Kämpfer et al. 2003) Sánchez-Porro et al. 2009, Salmonella paratyphi (ex Kayser 1902) Ezaki et al. 2000, Schineria Tóth et al. 2001, Schineria larvae Toth et al. 2001, Serpula Stanton et al. 1991, Serpula hyodysenteriae (Harris et al. 1972) Stanton et al. 1991, Serpula innocens (Kinyon and Harris 1979) Stanton et al. 1991, Serpulina alvinipulli Stanton et al. 1998, Sinococcus Li et al. 2006, Sinococcus qinghaiensis Li et al. 2006, Sinomonas albida (Ding et al. 2009) Zhou et al. 2012 Sinomonas echigonensis (Ding et al. 2009) Zhou et al. 2012, Sphingobacterium composti Yoo et al. 2007, Streptomyces avermectinius Takahashi et al. 2002, Streptomyces fumigatiscleroticus (ex Pridham 1970) Goodfellow et al. 1986, Streptoverticillium reticulum subsp. protomycicum (ex Sugawara et al. 1963) Locci and Schofield 1989, Streptoverticillium verticillium subsp. quintum (ex Arai 1976) Locci and Schofield 1989, Streptoverticillium verticillium subsp. tsukushiense (ex Arai 1976) Locci and Schofield 1989, Syntrophomonas bryantii (Stieb and Schink 1985) Wu et al. 2006,Terribacillus goriensis (Kim et al. 2007) Krishnamurthi and Chakrabarti 2008, Thalassobius gelatinovorus (Rüger and Höfle 1992) Arahal et al. 2005, Thermus thermophilus (ex Oshima and Imahori 1974) Williams et al. 1995, Tychonema, Tychonema bourrellyi (Lund) Anagnostidis and Komárek 1988 emend. Suda et al. 2002, Xanthomonas populi (ex Ridé 1958) Ridé and Ridé 1992, Vibrio alginolyticus subsp. iophagus (ex Welton and Woods 1973) Emod et al. 1983, Yania Li et al. 2004, Yania flava Li et al. 2005, Yania halotolerans Li et al. 2004, Yaniaceae Li et al. 2005, Yersinia pseudotuberculosis subsp. pestis (van Loghem) Bercovier et al. 1981 (rejected name), Yersinia pseudotuberculosis subsp. pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965, Zimmermannella Lin et al. 2004, Zimmermannella alba Lin et al. 2004, Zimmermannella bifida Lin et al. 2004, Zimmermannella faecalis Lin et al. 2004, Zimmermannella helvola Lin et al. 2004.
All names cited in the table 1 of the file Endangered prokaryotic names.
IV - Desulfobacter giganteus Esnault et al. 1988 appears in Validation List no. 26. However it is an incorrect name and it is cited in the file List D - L as Desulfovibrio giganteus Esnault et al. 1988, sp. nov.
V - Thermodesulfobacterium mobile (Rozanova and Khudyakova 1974) Rozanova and Pivovarova 1991 appears in Validation List no. 36. However it is an incorrect name and it is cited in the file List S - Z as Thermodesulfobacterium thermophilum (Rozanova and Khudyakova 1974) Rozanova and Pivovarova 1995.
VI - Thermus profundus Kobayashi et al. 1995 (Validation List no. 52) is an orthographically incorrect name. The correct entry (Thermococcus profundus Kobayashi et al. 1995) appears in Validation List no. 53. So, Thermus profundus is not cited in the file List S - Z.
VII - The spelling of the specific epithet phocidae (sic) in Mycoplasma phocidae Ruhnke and Madoff 1992, has been corrected by Heldtander Königsson et al. 2001 to Mycoplasma phocae. However, this correction is forbidden by the Note for Rule 61 and the name Mycoplasma phocae corrig. Ruhnke and Madoff 1992 is illegitimate. So, this correction is not cited in the file List M - R.
VIII - Mycoplasma haemosuis Neimark et al. 2002, nom. nov. is illegitimate and this taxon is cited in the file List M - R as Mycoplasma suis corrig. (Splitter 1950) Neimark et al. 2002.
IX - The spelling of the specific epithet macrogoltabidus (sic) in Sphingomonas macrogoltabidus Takeuchi et al. 1993, has been corrected by Yabuuchi 2002 to Sphingomonas macrogolitabida. However, this correction is forbidden by the Note for Rule 61 and the name Sphingomonas macrogolitabida corrig. Takeuchi et al. 1993 is illegitimate. So, this correction is not cited in the file List S - Z.
X - The Approved Lists of Bacterial Names and the Amended Edition of the Approved Lists of Bacterial Names did not include the name Rhodococcus sputi, which was published by Tsukamura (1978) in the International Journal of Systematic Bacteriology. In view of the fact that the name was not included in the Approved Lists, Tsukamura and Yano revived the name Rhodococcus sputi: Rhocococcus sputi (ex Tsukamura 1978) Tsukamura and Yano 1985. However, according to Rule 24a, Note 1, the name Rhodococcus sputi Tsukamura 1978 is to be treated as being included in the Approved Lists and this name has priority over Rhodococcus sputi (ex Tsukamura 1978) Tsukamura and Yano 1985. Consequently, Rhodococcus sputi (ex Tsukamura 1978) Tsukamura and Yano 1985 does not appear in the file List M - R.
XI - The Approved Lists of Bacterial Names and the Amended Edition of the Approved Lists of Bacterial Names did not include the name Rhodococcus sputi, which was published by Tsukamura (1978) in the International Journal of Systematic Bacteriology [1]. In view of the fact that the name was not included in the Approved Lists, Tsukamura and Yano revived the name Rhodococcus sputi: Rhocococcus sputi (ex Tsukamura 1978) Tsukamura and Yano 1985 [2]. However, according to Rule 24a, Note 1, the name Rhodococcus sputi Tsukamura 1978 is to be treated as being included in the Approved Lists and this name has priority over Rhodococcus sputi (ex Tsukamura 1978) Tsukamura and Yano 1985 [3]. Consequently, Rhodococcus sputi (ex Tsukamura 1978) Tsukamura and Yano 1985 does not appear in the file List M - R.
XII - Streptococcus infantarius subsp. coli Schlegel et al. 2000, and Streptococcus infantarius subsp. infantarius Schlegel et al. 2000 are not validly published and they are not cited in the file List S - Z.
XIII - Streptococcus thermophilus (ex Orla-Jensen 1919) Schleifer et al. 1995, nom. rev. is illegitimate and this name is not cited in the file List S - Z.
XIII - The name Desulfobaculum xiamenensis Zhao et al. 2012 has been corrected to Desulfobaculum xiamenense corrig. Zhao et al. 2012. So Desulfobaculum xiamenensis is not cited in the file List D - L.
XIV - The names Methanomassiliicoccus Dridi et al. 2012, gen. nov. and Methanomassiliicoccus luminyensis Dridi et al. 2012, sp. nov., as cited in the August 2012 issue of the IJSEM, are not validly published and they are not cited in the file List M - R.
XV - The names Verminephrobacter Pinel et al. 2008 and Verminephrobacter eiseniae Pinel et al. 2008, published in the September 2008 issue of the IJSEM, are not validly published and they are not cited in the file List S - Z.
List A - C
List D - L
List M - R
List S - Z
