Genus Hydrogenophaga
Warning: In the List of Prokaryotic names with Standing in Nomenclature, an arrow (→) only indicates the sequence of valid publication of names and does not mean that the last name in the sequence must be used (see: Introduction).
Number of species, including synonyms, cited in this file: 14
Number of subspecies, including synonyms, cited in this file: 0
Classification (Warning: see also the file "Classification of prokaryotes: Introduction").
For a detailed description of this taxon see Bergey’s Manual of Systematics of Archaea and Bacteria (BMSAB).
Hydrogenophaga Willems et al. 1989, gen. nov.
Type species: ¤ Hydrogenophaga flava (Niklewski 1910) Willems 1989.
Etymology: N.L. n. hydrogenum (from Gr. n. hudôr, water; and Gr. v. gennaô, to produce), hydrogen (that which produces water, so called because it forms water when exposed to oxygen); Gr. v. phagein, to eat, to devour; N.L. fem. n. Hydrogenophaga, eater of hydrogen.
Valid publication: WILLEMS (A.), BUSSE (J.), GOOR (M.), POT (B.), FALSEN (E.), JANTZEN (E.), HOSTE (B.), GILLIS (M.), KERSTERS (K.), AULING (G.) and DE LEY (J.): Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava") and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol., 1989, 39, 319-333.
Original article in IJSEM Online
Hydrogenophaga aquatica Lin et al. 2017, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) CC-KL-3=BCRC 80937=JCM 31216.
Sequence accession no. (16S rRNA gene) for the type strain: KU358714.
Etymology: L. fem. adj. aquatica, living in water.
Source: Environmental.
Valid publication: LIN, S. Y., HAMEED, A., WEN, C. Z., HSU, Y. H., LIU, Y. C., LAI, W. A. and YOUNG, C. C. 2017. Hydrogenophaga aquatica sp. nov., isolated from a hot spring. Int. J. Syst. Evol. Microbiol., 67, 3716-3721.
Original article in IJSEM Online
Hydrogenophaga atypica Kämpfer et al. 2005, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) BSB 41.8 = CIP 108118 = DSM 15342.
Sequence accession no. (16S rRNA gene) for the type strain: AJ585992.
Etymology: Gr. pref. a-, not; L. adj. typicus, typical; N.L. fem. adj. atypica, atypical.
Valid publication: KÄMPFER (P.), SCHULZE (R.), JÄCKEL (U.), MALIK (K.A.), AMANN (R.) and SPRING (S.): Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge. Int. J. Syst. Evol. Microbiol., 2005, 55, 341-344.
Original article in IJSEM Online
Hydrogenophaga bisanensis Yoon et al. 2008, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) K102 = CCUG 54518 = KCTC 12980.
Sequence accession no. (16S rRNA gene) for the type strain: EF532793.
Etymology: N.L. fem. adj. bisanensis, of Bisan, Daegu, Korea, from where the type strain was isolated.
Valid publication: YOON (J.H.), KANG (S.J.), RYU (S.H.), JEON (C.O.) and OH (T.K.): Hydrogenophaga bisanensis sp. nov., isolated from wastewater of a textile dye works. Int. J. Syst. Evol. Microbiol., 2008, 58, 393-397.
Original article in IJSEM Online
Hydrogenophaga caeni Chung et al. 2007, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) EMB71 = DSM 17962 = KCTC 12613.
Sequence accession no. (16S rRNA gene) for the type strain: DQ372983.
Etymology: L. gen. n. caeni, of mud, referring to isolation of the type strain from activated sludge.
Valid publication: CHUNG (B.S.), RYU (S.H.), PARK (M.), JEON (Y.), CHUNG (Y.R.) and JEON (C.O.): Hydrogenophaga caeni sp. nov., isolated from activated sludge. Int. J. Syst. Evol. Microbiol., 2007, 57, 1126-1130.
Original article in IJSEM Online
Hydrogenophaga crassostreae Baek et al. 2017, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) LPB0072=KACC 18705=JCM 31188.
Sequence accession no. (16S rRNA gene) for the type strain: KU198320.
Whole-genome sequence accession no.: CP017476.
Etymology: N.L. gen. n. crassostreae, pertaining to Crassostrea, the genus name of the Pacific oyster, Crassostreae gigas, from which the type strain was isolated.
Source: Animal.
Valid publication: BAEK, C., KIM, E., SHIN, S. K., CHOI, S. and YI, H. 2017. Hydrogenophaga crassostreae sp. nov., isolated from a Pacific oyster. Int. J. Syst. Evol. Microbiol., 67, 4045-4049.
Original article in IJSEM Online
Hydrogenophaga defluvii Kämpfer et al. 2005, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) BSB 9.5 = CIP 108119 = DSM 15341.
Sequence accession no. (16S rRNA gene) for the type strain: AJ585993.
Etymology: L. gen. n. defluvii, of a flowing down, of sewage.
Valid publication: KÄMPFER (P.), SCHULZE (R.), JÄCKEL (U.), MALIK (K.A.), AMANN (R.) and SPRING (S.): Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isolated from activated sludge. Int. J. Syst. Evol. Microbiol., 2005, 55, 341-344.
Original article in IJSEM Online
Hydrogenophaga flava (Niklewski 1910) Willems et al. 1989, comb. nov. (Type species of the genus.)
Type strain: (see also Global Catalogue of Microorganisms) ATCC 33667= CCUG 1658 = CCUG 22894 = CFBP 2438 = CIP 103271 = DSM 619 = JCM 21413 = LMG 2185 = NBRC 102514.
Sequence accession no. (16S rRNA gene) for the type strain: AF078771.
Basonym: ¤ Pseudomonas flava (Niklewski 1910) Davis 1969 (Approved Lists 1980).
Other synonym: "Hydrogenomonas flava" Niklewski 1910.
Etymology: L. fem. adj. flava, yellow.
Valid publication: WILLEMS (A.), BUSSE (J.), GOOR (M.), POT (B.), FALSEN (E.), JANTZEN (E.), HOSTE (B.), GILLIS (M.), KERSTERS (K.), AULING (G.) and DE LEY (J.): Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava") and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol., 1989, 39, 319-333.
Original article in IJSEM Online
Hydrogenophaga intermedia Contzen et al. 2001, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) S1 = DSM 5680 = IAM 14919 = JCM 21401 = NBRC 102510.
Sequence accession no. (16S rRNA gene) for the type strain: AF019037.
Etymology: L. fem. adj. intermedia, that is between, intermediate, referring to the phylogenetic position of this organism within the genus Hydrogenophaga.
References: Validation List no. 80. Int. J. Syst. Evol. Microbiol. 2001, 51, 793-794. [CONTZEN (M.), MOORE (E.R.B.), BLÜMEL (S.), STOLZ (A.) and KÄMPFER (P.): Hydrogenophaga intermedia sp. nov., a 4-aminobenzenesulfonate degrading organism. Syst. Appl. Microbiol., 2000, 23, 487-493.]
Validation List no. 80 in IJSEM Online - Effective publication Online
Note: According to Rules 27(3) and 30, this name is not validly published, because the original publication makes reference to the deposit of the type strain in a single recognized culture collection. However, according to the Judicial Opinion 81, Hydrogenophaga intermedia Contzen et al. 2001 is considered to be validly published, since deposit in a second culture collection in a different country has been documented.
References:
1 EUZÉBY (J.P.) and TINDALL (B.J.): Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an Opinion. Int. J. Syst. Evol. Microbiol., 2004, 54, 293-301.
Original article in IJSEM Online
2 JUDICIAL COMMISSION OF THE INTERNATIONAL COMMITTEE ON SYSTEMATICS OF PROKARYOTES: Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81. Int. J. Syst. Evol. Microbiol., 2008, 58, 1755-1763.
Opinion 81 in IJSEM Online
Hydrogenophaga laconesensis Mantri et al. 2017, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) HWB-10=KTCC 42478=LMG 28681.
Sequence accession no. (16S rRNA gene) for the type strain: KT756664.
Etymology: -.
Source: Environmental - freshwater.
Valid publication: VALIDATION LIST no. 175. List of new names and new combinations previously effectively, but not validly, published. Int. J. Syst. Evol. Microbiol., 67 (2017), 1095-1098.
Validation List Online
Effective publication: MANTRI, S., CHINTHALAGIRI, M. R. and GUNDLAPALLY, S. R. 2016. Description of Hydrogenophaga laconesensis sp. nov. isolated from tube well water. Arch. Microbiol., 198, 637-644.
Effective publication Online
Hydrogenophaga luteola Du et al. 2015, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) THG-SQE7=CCTCC AB 2014314=JCM 30433=KCTC 42501.
Sequence accession no. (16S rRNA gene) for the type strain: KM598239.
Whole-genome sequence accession no. for the type strain: -.
Etymology: L. fem. adj. luteola, yellowish, referring to the colour of the colonies on R2A agar.
Source: Environmental - freshwater.
Valid publication: Validation List no. 166. List of new names and new combinations previously effectively, but not validly, published. Int. J. Syst. Evol. Microbiol., 65 (2015), 3763-3767.
Validation List Online
Effective publication: Du, J., Yang, J.-E., Singh, H., Akter, S., Won, K., Yin, C.S., Jin, F.-X. and Yi, T.-H. 2015. Hydrogenophaga luteola sp. nov. isolated from reed pond water. Antonie van Leeuwenhoek 108, 695-701.
Effective publication Online
Note: Etymology corrected to L. fem. adj..
Hydrogenophaga palleronii (Davis 1970) Willems et al. 1989, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) Stanier 362t1 = ATCC 17724= CCUG 1780 = CCUG 20334 = CFBP 2445 = CIP 103304 = DSM 63 = JCM 21412 = LMG 2366 = NBRC 102513 = VKM B-1328.
Sequence accession no. (16S rRNA gene) for the type strain: AF078769.
Basonym: ¤ Pseudomonas palleronii Davis 1970 (Approved Lists 1980).
Etymology: N.L. gen. masc. n. palleronii, of Palleroni, named after N.J. Palleroni, who first isolated this organism.
Valid publication: WILLEMS (A.), BUSSE (J.), GOOR (M.), POT (B.), FALSEN (E.), JANTZEN (E.), HOSTE (B.), GILLIS (M.), KERSTERS (K.), AULING (G.) and DE LEY (J.): Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava") and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol., 1989, 39, 319-333.
Original article in IJSEM Online
Hydrogenophaga pseudoflava (Auling et al. 1978) Willems et al. 1989, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) GA3 = ATCC 33668= CCUG 13799 = CFBP 2439 = CIP 103270 = DSM 1034 = JCM 21410 = LMG 5945 = NBRC 102511.
Sequence accession no. (16S rRNA gene) for the type strain: AF078770.
Basonym: ¤ Pseudomonas pseudoflava Auling et al. 1978 (Approved Lists 1980).
Etymology: Gr. adj. pseudês, false; L. fem. adj. flava, yellow, and also a specific epithet; N.L. fem. adj. pseudoflava, not the true (Hydrogenophaga) flava, referring to the close relationship to Hydrogenophaga flava.
Valid publication: WILLEMS (A.), BUSSE (J.), GOOR (M.), POT (B.), FALSEN (E.), JANTZEN (E.), HOSTE (B.), GILLIS (M.), KERSTERS (K.), AULING (G.) and DE LEY (J.): Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava") and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol., 1989, 39, 319-333.
Original article in IJSEM Online
Hydrogenophaga soli Yang et al. 2017, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) S10=KCTC 52520=JCM 31711.
Sequence accession no. (16S rRNA gene) for the type strain: KX636167.
Etymology: L. gen. n. soli, from soil.
Source: Environmental - soil.
Valid publication: YANG, D., CHA, S., CHOI, J. and SEO, T. 2017. Hydrogenophaga soli sp. nov., isolated from rice field soil. Int. J. Syst. Evol. Microbiol., 67, 4200-4204.
Original article in IJSEM Online
Hydrogenophaga taeniospiralis (Lalucat et al. 1982) Willems et al. 1989, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) 2K1 = ATCC 49743= CCUG 15921 = CIP 106727 = DSM 2082 = JCM 21411 = LMG 7170 = NBRC 102512.
Sequence accession no. (16S rRNA gene) for the type strain: AF078768.
Basonym: ¤ Pseudomonas taeniospiralis Lalucat et al. 1982.
Etymology: Gr. n. tainia (Latin transliteration taenia), band, ribbon; N.L. fem. adj. spiralis (from L. n. spira, coil; and L. fem. suff. -alis, suffix denoting pertaining to), coiled; N.L. fem. adj. taeniospiralis, ribbon coiled, after Caedibacter taeniospiralis, an organism with which it shares characteristics.
Valid publication: WILLEMS (A.), BUSSE (J.), GOOR (M.), POT (B.), FALSEN (E.), JANTZEN (E.), HOSTE (B.), GILLIS (M.), KERSTERS (K.), AULING (G.) and DE LEY (J.): Hydrogenophaga, a new genus of hydrogen-oxidizing bacteria that includes Hydrogenophaga flava comb. nov. (formerly Pseudomonas flava), Hydrogenophaga palleronii (formerly Pseudomonas palleronii), Hydrogenophaga pseudoflava (formerly Pseudomonas pseudoflava and "Pseudomonas carboxydoflava") and Hydrogenophaga taeniospiralis (formerly Pseudomonas taeniospiralis). Int. J. Syst. Bacteriol., 1989, 39, 319-333.
Original article in IJSEM Online