Genus Sphingorhabdus
Warning: In the List of Prokaryotic names with Standing in Nomenclature, an arrow (→) only indicates the sequence of valid publication of names and does not mean that the last name in the sequence must be used (see: Introduction).
Number of species, including synonyms, cited in this file: 7
Number of subspecies, including synonyms, cited in this file: 0
Classification (Warning: see also the file "Classification of prokaryotes: Introduction").
Sphingorhabdus Jogler et al. 2013, gen. nov.
Type species: ¤ Sphingorhabdus planktonica Jogler et al. 2013.
Etymology: N.L. n. sphingosinum (from Gr. gen. n. sphingos, of sphinx and suff. -ine), sphingosine; N.L. pref. sphingo-, pertaining to sphingosine; Gr. fem. n. rhabdos, rod; N.L. fem. n. Sphingorhabdus, a sphingosine-containing rod.
Valid publication: JOGLER (M.), CHEN (H.), SIMON (J.), ROHDE (M.), BUSSE (H.J.), KLENK (H.P.), TINDALL (B.J.) and OVERMANN (J.): Description of Sphingorhabdus planktonica gen. nov., sp. nov. and reclassification of three related members of the genus Sphingopyxis in the genus Sphingorhabdus gen. nov. Int. J. Syst. Evol. Microbiol., 2013, 63,1342-1349.
Original article in IJSEM Online
→ Sphingorhabdus Jogler et al. 2013 emend. Yang et al. 2017.
Reference: YANG, S. Z., XIONG, X., FENG, G. D., LI, H. P. and ZHU, H. H. 2017. Reclassification of Sphingopyxis contaminans as Sphingorhabdus contaminans comb. nov. and emended description of the genus Sphingorhabdus. Int. J. Syst. Evol. Microbiol., 67, 4328-4331.
Original article.
Sphingorhabdus arenilitoris Park et al. 2014, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) GJR-7=KCTC 42051=CECT 8531.
Sequence accession no. (16S rRNA gene) for the type strain: KJ452169.
Etymology: L. n. arena, sand; L. n. litus -oris, the seashore, coast; N.L. gen. n. arenilitoris, of sand of the seashore, from which the type strain was isolated.
Source: Environmental - marine.
Valid publication: PARK, J.-M., PARK, S., JUNG, Y.-T., KIM, H., LEE, J.-S. and YOON, J.-H. 2014. Sphingorhabdus arenilitoris sp. nov., isolated from a coastal sand, and reclassification of Sphingopyxis rigui as Sphingorhabdus rigui comb. nov. and Sphingopyxis wooponensis as Sphingorhabdus wooponensis comb. nov. Int. J. Syst. Evol. Microbiol., 64, 2551-2557.
Original article in IJSEM Online
Sphingorhabdus buctiana Chen et al. 2018, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) T5=CGMCC 1.12929=JCM 30114.
Sequence accession no. (16S rRNA gene) for the type strain: KJ667149.
Etymology: N/A.
Source: Environmental - freshwater.
Valid publication: VALIDATION LIST no. 182. List of new names and new combinations previously effectively, but not validly, published. Int. J. Syst. Evol. Microbiol., 68 (2018), 2130-2133.
Validation List Online
Effective publication: CHEN, H., PIAO, A. L., TAN, X., NOGI, Y., YEO, J., LU, H., FENG, Q. Q. and LV, J. 2018. Sphingorhabdus buctiana sp. nov., isolated from fresh water, and reclassification of Sphingopyxis contaminans as Sphingorhabdus contaminans comb. nov. Antonie van Leeuwenhoek, 111, 323-331.
Effective publication Online
Sphingorhabdus contaminans Yang et al. 2017, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) JC 216=KCTC 32445=LMG 27671.
Sequence accession no. (16S rRNA gene) for the type strain: KY966260.
Basonym: ¤ Sphingopyxis contaminans Subhash et al. 2014.
Etymology: L. part. adj. contaminans, contaminating.
Source: Laboratory.
Valid publication: YANG, S. Z., XIONG, X., FENG, G. D., LI, H. P. and ZHU, H. H. 2017. Reclassification of Sphingopyxis contaminans as Sphingorhabdus contaminans comb. nov. and emended description of the genus Sphingorhabdus. Int. J. Syst. Evol. Microbiol., 67, 4328-4331.
Original article in IJSEM Online
Sphingorhabdus flavimaris (Yoon and Oh 2005) Jogler et al. 2013, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) SW-151 = DSM 16223 = KCTC 12232.
Sequence accession no. (16S rRNA gene) for the type strain: AY554010.
Basonym: ¤ Sphingopyxis flavimaris Yoon and Oh 2005.
Etymology: L. adj. flavus, yellow; L. gen. n. maris, of the sea; N.L. gen. n. flavimaris, of the yellow sea.
Valid publication: JOGLER (M.), CHEN (H.), SIMON (J.), ROHDE (M.), BUSSE (H.J.), KLENK (H.P.), TINDALL (B.J.) and OVERMANN (J.): Description of Sphingorhabdus planktonica gen. nov., sp. nov. and reclassification of three related members of the genus Sphingopyxis in the genus Sphingorhabdus gen. nov. Int. J. Syst. Evol. Microbiol., 2013, 63,1342-1349.
Original article in IJSEM Online
Sphingorhabdus litoris (Kim et al. 2008) Jogler et al. 2013, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) FR1093 = DSM 22379 = IMSNU 14133 = JCM 14162 = KCTC 12764.
Sequence accession no. (16S rRNA gene) for the type strain: DQ781321.
Basonym: ¤ Sphingopyxis litoris Kim et al. 2008.
Etymology: L. gen. n. litoris, of the seashore, of the coast.
Valid publication: JOGLER (M.), CHEN (H.), SIMON (J.), ROHDE (M.), BUSSE (H.J.), KLENK (H.P.), TINDALL (B.J.) and OVERMANN (J.): Description of Sphingorhabdus planktonica gen. nov., sp. nov. and reclassification of three related members of the genus Sphingopyxis in the genus Sphingorhabdus gen. nov. Int. J. Syst. Evol. Microbiol., 2013, 63,1342-1349.
Original article in IJSEM Online
Sphingorhabdus marina (Kim et al. 2008) Jogler et al. 2013, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) FR1087 = DSM 22363 = IMSNU 14132 = JCM 14161 = KCTC 12763.
Sequence accession no. (16S rRNA gene) for the type strain: DQ781320.
Basonym: ¤ Sphingopyxis marina Kim et al. 2008.
Etymology: L. fem. adj. marina, of the sea, marine.
Valid publication: JOGLER (M.), CHEN (H.), SIMON (J.), ROHDE (M.), BUSSE (H.J.), KLENK (H.P.), TINDALL (B.J.) and OVERMANN (J.): Description of Sphingorhabdus planktonica gen. nov., sp. nov. and reclassification of three related members of the genus Sphingopyxis in the genus Sphingorhabdus gen. nov. Int. J. Syst. Evol. Microbiol., 2013, 63,1342-1349.
Original article in IJSEM Online
Sphingorhabdus pacifica corrig. Romanenko et al. 2015, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) KMM 9574=JCM 30177=NRIC 0922.
Sequence accession no. (16S rRNA gene) for the type strain: AB936074.
Etymology: N/A.
Source: Environmental - marine.
Valid publication: VALIDATION LIST no. 163. List of new names and new combinations previously effectively, but not validly, published. Int. J. Syst. Evol. Microbiol., 65 (2015), 1105-1111.
Validation List Online
Effective publication: ROMANENKO, L. A., TANAKA, N., SVETASHEV, V. I. and MIKHAILOV, V. V. 2015. Sphingorhabdus pacificus sp. nov., isolated from sandy sediments of the Sea of Japan seashore. Arch Microbiol, 197, 147-153.
Effective publication Online
Note: Specific epithet corrected on validation.
Sphingorhabdus planktonica Jogler et al. 2013, sp. nov. (Type species of the genus.)
Type strain: (see also Global Catalogue of Microorganisms) G1A_585 = 585 = DSM 25081 = LMG 26646.
Sequence accession no. (16S rRNA gene) for the type strain: JN381068.
Etymology: N.L. fem. adj. planktonica (from Gr. adj. planktos, wandering), living in the plankton, planktonic.
Valid publication: JOGLER (M.), CHEN (H.), SIMON (J.), ROHDE (M.), BUSSE (H.J.), KLENK (H.P.), TINDALL (B.J.) and OVERMANN (J.): Description of Sphingorhabdus planktonica gen. nov., sp. nov. and reclassification of three related members of the genus Sphingopyxis in the genus Sphingorhabdus gen. nov. Int. J. Syst. Evol. Microbiol., 2013, 63,1342-1349.
Original article in IJSEM Online
Sphingorhabdus rigui Park et al. 2014, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) 01SU5-P=KCTC 23326=JCM 17509.
Sequence accession no. (16S rRNA gene) for the type strain: HQ436492.
Whole-genome sequence accession no. for the type strain: -.
Basonym: ¤ Sphingopyxis rigui Baik et al. 2013
Etymology: L. gen. n. rigui, of a well-watered place.
Source: Environmental - marine.
Valid publication: PARK, J.-M., PARK, S., JUNG, Y.-T., KIM, H., LEE, J.-S. and YOON, J.-H. 2014. Sphingorhabdus arenilitoris sp. nov., isolated from a coastal sand, and reclassification of Sphingopyxis rigui as Sphingorhabdus rigui comb. nov. and Sphingopyxis wooponensis as Sphingorhabdus wooponensis comb. nov. Int. J. Syst. Evol. Microbiol., 64, 2551-2557.
Original article in IJSEM Online
Sphingorhabdus wooponensis Park et al. 2014, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) 03SU3-P=KCTC 23340=JCM 17547.
Sequence accession no. (16S rRNA gene) for the type strain: HQ436493.
Whole-genome sequence accession no. for the type strain: -.
Basonym: ¤ Sphingopyxis wooponensis Baik et al. 2013
Etymology: N.L. fem. adj. wooponensis, of or belonging to Woopo wetland, Republic of Korea, the geographical origin of the type strain of the species.
Source: Environmental - marine.
Valid publication: PARK, J.-M., PARK, S., JUNG, Y.-T., KIM, H., LEE, J.-S. and YOON, J.-H. 2014. Sphingorhabdus arenilitoris sp. nov., isolated from a coastal sand, and reclassification of Sphingopyxis rigui as Sphingorhabdus rigui comb. nov. and Sphingopyxis wooponensis as Sphingorhabdus wooponensis comb. nov. Int. J. Syst. Evol. Microbiol., 64, 2551-2557.
Original article in IJSEM Online