Genus Peptoniphilus
Warning: In the List of Prokaryotic names with Standing in Nomenclature, an arrow (→) only indicates the sequence of valid publication of names and does not mean that the last name in the sequence must be used (see: Introduction).
Number of species, including synonyms, cited in this file: 16
Number of subspecies, including synonyms, cited in this file: 0
Classification (Warning: see also the file "Classification of prokaryotes: Introduction").
For a detailed description of this taxon see Bergey’s Manual of Systematics of Archaea and Bacteria (BMSAB).
Peptoniphilus Ezaki et al. 2001, gen. nov.
Type species: ¤ Peptoniphilus asaccharolyticus (Distaso 1912) Ezaki et al. 2001.
Etymology: N.L. n. peptonum, peptone; N.L. adj. philus -a -um (from Gr. adj. philos -ê -on), friend, loving; N.L. masc. n. Peptoniphilus, friend of peptone, referring to the use of peptone as a major energy source.
Valid publication: EZAKI (T.), KAWAMURA (Y.), LI (N.), LI (Z.Y.), ZHAO (L.) and SHU (S.): Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. Int. J. Syst. Evol. Microbiol., 2001, 51, 1521-1528.
Original article in IJSEM Online
Peptoniphilus asaccharolyticus (Distaso 1912) Ezaki et al. 2001, comb. nov. (Type species of the genus.)
Type strain: (see also Global Catalogue of Microorganisms) ATCC 14963= CCUG 9988 = CIP 74.17 = DSM 20463 = JCM 1765 = NCTC 11461.
Sequence accession no. (16S rRNA gene) for the type strain: AF542228.
Basonym: ¤ Peptococcus asaccharolyticus (Distaso 1912) Douglas 1957 (Approved Lists 1980).
Other synonyms: ¤ Peptostreptococcus asaccharolyticus (Distaso 1912) Ezaki et al. 1983, "Staphylococcus asaccharolyticus" Distaso 1912, "Micrococcus asaccharolyticus" (Distaso 1912) Hall 1948.
Etymology: Gr. pref. a, not; Gr. n. sakchâr, sugar; N.L. masc. adj. lyticus (from Gr. masc. adj. lutikos), able to loosen, able to dissolve; N.L. masc. adj. asaccharolyticus, not digesting sugar.
Valid publication: EZAKI (T.), KAWAMURA (Y.), LI (N.), LI (Z.Y.), ZHAO (L.) and SHU (S.): Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. Int. J. Syst. Evol. Microbiol., 2001, 51, 1521-1528.
Original article in IJSEM Online
Note: According to Rules 27(3) and 30, this name is not validly published because the effective publication only documents deposit of the type strain in a single recognized culture collection. However, according to the Judicial Opinion 81, Peptoniphilus asaccharolyticus (Distaso 1912) Ezaki et al. 2001 is to be considered to be validly published.
References:
1 EUZÉBY (J.P.) and TINDALL (B.J.): Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an Opinion. Int. J. Syst. Evol. Microbiol., 2004, 54, 293-301.
Original article in IJSEM Online
2 JUDICIAL COMMISSION OF THE INTERNATIONAL COMMITTEE ON SYSTEMATICS OF PROKARYOTES: Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81. Int. J. Syst. Evol. Microbiol., 2008, 58, 1755-1763.
Opinion 81 in IJSEM Online
Peptoniphilus catoniae Patel et al. 2016, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) M6.X2D=DSM 29874=CCUG 66798.
Sequence accession no. (16S rRNA gene) for the type strain: KR911910.
Whole-genome sequence accession no. for the type strain: .
Etymology: L. gen. n. catoniae, of Cato, in honour of Elizabeth P. Cato, a United States microbiologist for her many contributions to anaerobic microbiology.
Source: Human.
Valid publication: PATEL, N. B., TITO, R. Y., OBREGON-TITO, A. J., O'NEAL, L., TRUJILLO-VILLAROEL, O., MARIN-REYES, L., TRONCOSO-CORZO, L., GUIJA-POMA, E., LEWIS, C. M. and LAWSON, P. A. 2016. Peptoniphilus catoniae sp. nov., isolated from a human faecal sample from a traditional Peruvian coastal community. Int. J. Syst. Evol. Microbiol., 66, 2019-2024.
Original article in IJSEM Online
Peptoniphilus coxii Citron et al. 2013, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) RMA 16757 = ATCC BAA-2106 = CCUG 59622 = JCM 16892.
Sequence accession no. (16S rRNA gene) for the type strain: GU938836.
Etymology: N.L. gen. n. coxii, of Cox, named after Mike Cox, an American microbiologist to honor him for his contributions to anaerobic microbiology.
Valid publication: Validation List no. 149. Int. J. Syst. Evol. Microbiol., 2013, 63, 1-5.
Effective publication: CITRON (D.M.), TYRRELL (K.L.) and GOLDSTEIN (E.J.C.): Peptoniphilus coxii sp. nov. and Peptoniphilus tyrrelliae sp. nov. isolated from human clinical infections. Anaerobe, 2012, 18, 244-248.
Validation List no. 149 in IJSEM Online - Effective publication Online
Peptoniphilus duerdenii Ulger-Toprak et al. 2012, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) WAL 18896 = ATCC BAA-1640 = CCUG 56065.
Sequence accession no. (16S rRNA gene) for the type strain: EU526290.
Etymology: N.L. gen. masc. n. duerdenii, of Duerden, to honour Dr Brian Duerden, a British microbiologist who has contributed much to our knowledge of anaerobic bacteriology.
Valid publication: ULGER-TOPRAK (N.), LAWSON (P.A.), SUMMANEN (P.), O'NEAL (L.) and FINEGOLD (S.M.): Peptoniphilus duerdenii sp. nov. and Peptoniphilus koenoeneniae sp. nov., isolated from human clinical specimens. Int. J. Syst. Evol. Microbiol., 2012, 62, 2336-2341.
Original article in IJSEM Online
Peptoniphilus gorbachii Song et al. 2010, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) WAL 10418 = ATCC BAA-1383 = CCUG 53341 = JCM 15634.
Sequence accession no. (16S rRNA gene) for the type strain: DQ911241.
Etymology: N.L. gen. masc. n. gorbachii, of Gorbach, to honor Sherwood Gorbach, who has contributed so much to our knowledge of anaerobic bacteriology.
Valid publication: Validation List no. 134. Int. J. Syst. Evol. Microbiol., 2010, 60, 1477-1479.
Effective publication: SONG (Y.), LIU (C.) and FINEGOLD (S.M.): Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov. and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin. J. Clin. Microbiol., 2007, 45, 1746-1752.
Validation List no. 134 in IJSEM Online - Effective publication Online
Peptoniphilus harei (Murdoch et al. 1997) Ezaki et al. 2001, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) CCUG 38491 = CIP 105323 = DSM 10020 = NCTC 13076.
Sequence accession no. (16S rRNA gene) for the type strain: Y07839.
Basonym: ¤ Peptostreptococcus harei Murdoch et al. 1997.
Etymology: N.L. gen. n. harei, of Hare, named after R. Hare, a British microbiologist.
Valid publication: EZAKI (T.), KAWAMURA (Y.), LI (N.), LI (Z.Y.), ZHAO (L.) and SHU (S.): Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. Int. J. Syst. Evol. Microbiol., 2001, 51, 1521-1528.
Original article in IJSEM Online
Note: According to Rules 27(3) and 30, this name is not validly published because the effective publication only documents deposit of the type strain in a single recognized culture collection. However, according to the Judicial Opinion 81, Peptoniphilus harei (Murdoch et al. 1997) Ezaki et al. 2001 is to be considered to be validly published.
References:
1 EUZÉBY (J.P.) and TINDALL (B.J.): Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an Opinion. Int. J. Syst. Evol. Microbiol., 2004, 54, 293-301.
Original article in IJSEM Online
2 JUDICIAL COMMISSION OF THE INTERNATIONAL COMMITTEE ON SYSTEMATICS OF PROKARYOTES: Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81. Int. J. Syst. Evol. Microbiol., 2008, 58, 1755-1763.
Opinion 81 in IJSEM Online
Peptoniphilus indolicus (Christiansen 1934) Ezaki et al. 2001, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) ATCC 29427= CCUG 17639 = CCUG 46591 = DSM 20464 = NCTC 11088.
Sequence accession no. (16S rRNA gene) for the type strain: AY153431.
Basonym: ¤ Peptococcus indolicus (Christiansen 1934) Sorensen 1975 (Approved Lists 1980).
Other synonyms: ¤ Peptostreptococcus indolicus (Christiansen 1934) Ezaki et al. 1983, "Micrococcus indolicus" Christiansen 1934.
Etymology: N.L. n. indolum, indol; L. masc. suff. -icus, suffix used with the sense of pertaining to; N.L. masc. adj. indolicus, pertaining to indole, referring to the ability of the organism to produce indole.
Valid publication: EZAKI (T.), KAWAMURA (Y.), LI (N.), LI (Z.Y.), ZHAO (L.) and SHU (S.): Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. Int. J. Syst. Evol. Microbiol., 2001, 51, 1521-1528.
Original article in IJSEM Online
Note: According to Rules 27(3) and 30, this name is not validly published because the effective publication only documents deposit of the type strain in a single recognized culture collection. However, according to the Judicial Opinion 81, Peptoniphilus indolicus (Christiansen 1934) Ezaki et al. 2001 is to be considered to be validly published.
References:
1 EUZÉBY (J.P.) and TINDALL (B.J.): Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an Opinion. Int. J. Syst. Evol. Microbiol., 2004, 54, 293-301.
Original article in IJSEM Online
2 JUDICIAL COMMISSION OF THE INTERNATIONAL COMMITTEE ON SYSTEMATICS OF PROKARYOTES: Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81. Int. J. Syst. Evol. Microbiol., 2008, 58, 1755-1763.
Opinion 81 in IJSEM Online
Peptoniphilus ivorii (Murdoch et al. 1997) Ezaki et al. 2001, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) CCUG 38492 = CIP 105325 = DSM 10022 = NCTC 13078.
Sequence accession no. (16S rRNA gene) for the type strain: Y07840.
Basonym: ¤ Peptostreptococcus ivorii Murdoch et al. 1997.
Etymology: N.L. gen. n. ivorii, of Ivor, a British microbiologist who first isolated the organism.
Valid publication: EZAKI (T.), KAWAMURA (Y.), LI (N.), LI (Z.Y.), ZHAO (L.) and SHU (S.): Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. Int. J. Syst. Evol. Microbiol., 2001, 51, 1521-1528.
Original article in IJSEM Online
Note: According to Rules 27(3) and 30, this name is not validly published because the effective publication only documents deposit of the type strain in a single recognized culture collection. However, according to the Judicial Opinion 81, Peptoniphilus ivorii (Murdoch et al. 1997) Ezaki et al. 2001 is to be considered to be validly published.
References:
1 EUZÉBY (J.P.) and TINDALL (B.J.): Status of strains that contravene Rules 27(3) and 30 of the Bacteriological Code. Request for an Opinion. Int. J. Syst. Evol. Microbiol., 2004, 54, 293-301.
Original article in IJSEM Online
2 JUDICIAL COMMISSION OF THE INTERNATIONAL COMMITTEE ON SYSTEMATICS OF PROKARYOTES: Status of strains that contravene Rules 27 (3) and 30 of the International Code of Nomenclature of Bacteria. Opinion 81. Int. J. Syst. Evol. Microbiol., 2008, 58, 1755-1763.
Opinion 81 in IJSEM Online
Peptoniphilus koenoeneniae Ulger-Toprak et al. 2012, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) WAL 18898 = ATCC BAA-1638 = CCUG 56067 = DSM 22616.
Sequence accession no. (16S rRNA gene) for the type strain: EU526291.
Etymology: N.L. fem. gen. n. koenoeneniae, of Könönen, to honour Dr Eija Könönen, Finnish microbiologist and dentist who has contributed a great deal to our knowledge of oral microbiology and anaerobic bacteriology.
Valid publication: ULGER-TOPRAK (N.), LAWSON (P.A.), SUMMANEN (P.), O'NEAL (L.) and FINEGOLD (S.M.): Peptoniphilus duerdenii sp. nov. and Peptoniphilus koenoeneniae sp. nov., isolated from human clinical specimens. Int. J. Syst. Evol. Microbiol., 2012, 62, 2336-2341.
Original article in IJSEM Online
Note: In the paper by Ulger-Toprak et al. 2012, the 16S rRNA sequence of the strain WAL 18896 is cited as EU526291. However, according to the NCBI Nucleotide, EU526291 is the sequence of the strain WAL 20371I.
Peptoniphilus lacrimalis (Li et al. 1992) Ezaki et al. 2001, comb. nov.
Type strain: (see also Global Catalogue of Microorganisms) ATCC 51171= CCUG 31350 = CIP 103724 = DSM 7455 = JCM 8139 = GIFU 7667 = NCTC 13149.
Sequence accession no. (16S rRNA gene) for the type strain: AF542230.
Basonym: ¤ Peptostreptococcus lacrimalis Li et al. 1992.
Etymology: L. n. lacrima, a tear; L. masc. suff. -alis, suffix denoting pertaining to; N.L. masc. adj. lacrimalis, pertaining to tears, referring to lacrimal gland where the organism was isolated.
Valid publication: EZAKI (T.), KAWAMURA (Y.), LI (N.), LI (Z.Y.), ZHAO (L.) and SHU (S.): Proposal of the genera Anaerococcus gen. nov., Peptoniphilus gen. nov. and Gallicola gen. nov. for members of the genus Peptostreptococcus. Int. J. Syst. Evol. Microbiol., 2001, 51, 1521-1528.
Original article in IJSEM Online
Peptoniphilus lacydonensis Beye et al. 2018, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) EL1=CSUR P2013=DSM 100661.
Sequence accession no. (16S rRNA gene) for the type strain: LN867000.
Whole-genome sequence accession no.: FNWF01000001.
Etymology: N.L. masc. adj. lacydonensis, pertaining to Lacydo, the ancient port of Marseille, where the patient from which strain EL1T was obtained, lived.
Source: Clinical.
Valid publication: VALIDATION LIST no. 182. List of new names and new combinations previously effectively, but not validly, published. Int. J. Syst. Evol. Microbiol., 68 (2018), 2130-2133.
Validation List Online
Effective publication: BEYE, M., BAKOUR, S., LE DAULT, E., RATHORED, J., MICHELLE, C., CADORET, F., RAOULT, D. and FOURNIER, P. E. 2018. Peptoniphilus lacydonensis sp. nov., a new human-associated species isolated from a patient with chronic refractory sinusitis. New Microbes New Infect., 23, 61-69.
Effective publication Online
Note: Etymology corrected on validation.
Peptoniphilus methioninivorax Rooney et al. 2011, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) DSM 22461 = NRRL B-23883.
Sequence accession no. (16S rRNA gene) for the type strain: GU440754.
Etymology: N.L. n. methioninum, methionine; L. adj. vorax, devouring, ravenous, voracious, consuming; N.L. masc. adj. methioninivorax, glycyl l-methionine-consuming.
Valid publication: ROONEY (A.P.), SWEZEY (J.L.), PUKALL (R.), SCHUMANN (P.) and SPRING (S.): Peptoniphilus methioninivorax sp. nov., a Gram-positive anaerobic coccus isolated from retail ground beef. Int. J. Syst. Evol. Microbiol., 2011, 61, 1962-1967.
Original article in IJSEM Online
Peptoniphilus olsenii Song et al. 2010, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) WAL 12922 = ATCC BAA-1384 = CCUG 53342 = JCM 15635.
Sequence accession no. (16S rRNA gene) for the type strain: DQ911242.
Etymology: N.L. gen. masc. n. olsenii, of Olsen, to honor Ingar Olsen, who has contributed much to our knowledge of anaerobic bacteriology.
Valid publication: Validation List no. 134. Int. J. Syst. Evol. Microbiol., 2010, 60, 1477-1479.
Effective publication: SONG (Y.), LIU (C.) and FINEGOLD (S.M.): Peptoniphilus gorbachii sp. nov., Peptoniphilus olsenii sp. nov. and Anaerococcus murdochii sp. nov. isolated from clinical specimens of human origin. J. Clin. Microbiol., 2007, 45, 1746-1752.
Validation List no. 134 in IJSEM Online - Effective publication Online
Peptoniphilus senegalensis Mishra et al. 2016, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) JC140=CSUR P154=DSM 25694.
Sequence accession no. (16S rRNA gene) for the type strain: JF824803.
Whole-genome sequence accession no. for the type strain: CAEL00000000.
Etymology: N.L. fem. adj. senegalensis, pertaining to Senegal, the country where the specimen in which strain JC140T was obtained.
Source: Human.
Valid publication: VALIDATION LIST no. 170. List of new names and new combinations previously effectively, but not validly, published. Int. J. Syst. Evol. Microbiol., 66 (2016), 2463-2466.
Validation List Online
Effective publication: MISHRA, A. K., LAGIER, J.-C., NGUYEN, T.-T., RAOULT, D., FOURNIER, P.-E. 2013. Non contiguous-finished genome sequence and description of Peptoniphilus senegalensis sp. nov. Stand. Genomic Sci. 7, 370-381.
Effective publication Online
Peptoniphilus stercorisuis Johnson et al. 2014, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) SF-S1=DSM 27563=NBRC 109839.
Sequence accession no. (16S rRNA gene) for the type strain: KF705042.
Etymology: L. masc. n. stercus, -oris, faeces, manure; L. gen. n. suis, of a pig; N.L. gen. n. stercorisuis. from pig faeces/manure, referring to the isolation of the organism from pig faeces/manure.
Source: Environmental.
Valid publication: JOHNSON, C. N., WHITEHEAD, T. R., COTTA, M. A., RHOADES, R. E. and LAWSON, P. A. 2014. Peptoniphilus stercorisuis sp. nov., isolated from a swine manure storage tank and description of Peptoniphilaceae fam. nov. Int. J. Syst. Evol. Microbiol., 64, 3538-3545.
Original article in IJSEM Online
Peptoniphilus timonensis Mishra et al. 2015, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) JC401=CSUR P165=DSM 25367.
Sequence accession no. (16S rRNA gene) for the type strain: JN657222.
Whole-genome sequence accession no. for the type strain: CAEL00000000.
Etymology: N.L. masc. adj. timonensis, of Timone, the name of the hospital where strain JC401 was cultivated..
Source: Human.
Valid publication: Validation List no. 165. List of new names and new combinations previously effectively, but not validly, published. Int. J. Syst. Evol. Microbiol., 65 (2015), 2777-2783.
Validation List Online
Effective publication: Mishra, A.K., Lagier, J.-C., Robert, C., Raoult, D., Fournier, P.-E. 2012. Non contiguous-finished genome sequence and description of Peptoniphilus timonensis sp. nov. Stand. Genomic Sci. 7, 1-11.
Effective publication Online
Note: Etymology corrected on validation.
Peptoniphilus tyrrelliae Citron et al. 2013, sp. nov.
Type strain: (see also Global Catalogue of Microorganisms) RMA 19911 = ATCC BAA-2105 = CCUG 59621 = JCM 16893.
Sequence accession no. (16S rRNA gene) for the type strain: GU938835.
Etymology: N.L. fem. gen. n. tyrrelliae, of Tyrrell, named after Kerin L. Tyrrell, for her contributions in anaerobic bacteriology to the R.M. Alden Research Lab.
Valid publication: Validation List no. 149. Int. J. Syst. Evol. Microbiol., 2013, 63, 1-5.
Effective publication: CITRON (D.M.), TYRRELL (K.L.) and GOLDSTEIN (E.J.C.): Peptoniphilus coxii sp. nov. and Peptoniphilus tyrrelliae sp. nov. isolated from human clinical infections. Anaerobe, 2012, 18, 244-248.
Validation List no. 149 in IJSEM Online - Effective publication Online
Note: The epithet tyrrelliae is not in accordance with the Recommendation 6(10) of the Bacteriological Code.
Reference: ASSOCIATE EDITOR, IJSEM: Validation List no. 149 (footnote ||||||). Int. J. Syst. Evol. Microbiol., 2013, 63, 1-5.
Validation List no. 149 in IJSEM Online