Species ***Chryseobacterium* *indologenes***

Name: Chryseobacterium indologenes (Yabuuchi et al. 1983) Vandamme et al. 1994

Category: Species

Proposed as: comb. nov.

Basonym: Flavobacterium indologenes Yabuuchi et al. 1983

Etymology: in.do.lo.ge.nes. N.L. neut. n. indolum, indole; Gr. suff. -genes, producing; from Gr. ind. v. gennaô, to produce; N.L. part. adj. indologenes, indole producing

Gender: neuter

Type strain: ATCC 29897; CCUG 14483; CCUG 14556; CDC 3716; CIP 101026; DSM 16777; GIFU 1347; IFO 14944; LMG 8337; NBRC 14944; NCTC 10796; RH 542

Conduct genome-based taxonomy at

16S rRNA gene: AB517708 Analyse FASTA

Valid publication: Vandamme P, Bernardet JF, Segers P, Kersters K, Holmes B. New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int. J. Syst. Bacteriol. 1994; 44:827-831.

IJSEM list: Anonymous. Notification list. Notification that new names and new combinations have appeared in volume 44, part 4 of the IJSB. Int J Syst Bacteriol 1995; 45:199-200.

Nomenclatural status: validly published under the ICNP

Taxonomic status: correct name

Risk group: 2

Synonyms:

Name	Kind
Flavobacterium indologenes Yabuuchi et al. 1983	homotypic synonym, validly published under the ICNP

Emendations:
- Montero-Calasanz et al. 2013 Montero-Calasanz Mdel C, Goker M, Rohde M, Sproer C, Schumann P, Busse HJ, Schmid M, Tindall BJ, Klenk HP, Camacho M. Chryseobacterium hispalense sp. nov., a plant-growth-promoting bacterium isolated from a rainwater pond in an olive plant nursery, and emended descriptions of Chryseobacterium defluvii, Chryseobacterium indologenes, Chryseobacterium wanjuense and Chryseobacterium gregarium. Int J Syst Evol Microbiol 2013; 63:4386-4395. Oren A, Garrity GM. Notification list. Notification that new names and new combinations have appeared in volume 63, part 12 of the IJSEM. Int J Syst Evol Microbiol 2014; 64:697-699.
  Notes:
  - 😢 The terminology used by the authors is in line with many other taxonomic studies and does not negatively affect their main results; some improvements may nevertheless be possible. Contrasting the term "chemotaxonomic" with "phenotypic" is not recommended. Whether taxa can have "members" is debatable. See the LPSN phylogeny page for details.
- Heidler von Heilborn et al. 2022 Heidler von Heilborn D, Nover LL, Weber M, Holzl G, Gisch N, Waldhans C, Mittler M, Kreyenschmidt J, Woehle C, Huttel B, et al. Polar lipid characterization and description of Chryseobacterium capnotolerans sp. nov., isolated from high CO2-containing atmosphere and emended descriptions of the genus Chryseobacterium, and the species C. balustinum, C. daecheongense, C. formosense, C. gleum, C. indologenes, C. joostei, C. scophthalmum and C. ureilyticum. Int J Syst Evol Microbiol 2022; 72:5372. Oren A, Garrity GM. Notification list. Notification that new names and new combinations have appeared in volume 72, part 5 of the IJSEM. Int J Syst Evol Microbiol 2022; 72:5476.
  Notes:
  - 😢 The terminology used by the authors is in line with many other taxonomic studies and does not negatively affect their main results; some improvements may nevertheless be possible. Contrasting the term "chemotaxonomic" with "phenotypic" is not recommended. Using the term "phylogenetic data" (or equivalent) for sequence data is not advocated. See the LPSN phylogeny page for details.

Notes:
- 😷 The risk group for Belgium has been imported on 2024-02-05. The full classification is: risk group = 2, note = "human and animal pathogen - biological class of risk animal: 2". — The risk group for Canada has been imported on 2024-02-27. The full classification is: risk group = 2, note = "Animal classification RG: 1 - Security sensitive biological agent: No - Terrestrial animal pathogen under Canadian Food Inspection Agency authority: No - Containment level: Containment Level 2". — The risk group for Swiss Confederation has been imported on 2024-02-01. The full classification is: risk group = 2. — The risk group for Germany has been imported on 2023-10-29. The full classification is: risk group = 2, note = "ht".
- 🎓 Name mentioned 200 times in PubMed until 2024-03-27.
- 🧍 According to Bartlett et al. (2022), this species is an established human pathogen. Publication: Bartlett A, Padfield D, Lear L, Bendall R, Vos M. A comprehensive list of bacterial pathogens infecting humans. Microbiology 2022; 168:0.
- 🧍 The genome of the type strain was sequenced as part of the GEBA (Genomic Encyclopedia of Bacteria and Archaea) project. Publication: Garcia-Lopez M, Meier-Kolthoff JP, Tindall BJ, Gronow S, Woyke T, Kyrpides NC, Hahnke RL, Goker M. Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of Bacteroidetes. Front Microbiol 2019; 10:2083.
- 🧍 The phylogenetic position of this species was determined in a genome-scale analysis by Hahnke et al. (2016). Publication: Hahnke RL, Meier-Kolthoff JP, Garcia-Lopez M, Mukherjee S, Huntemann M, Ivanova NN, Woyke T, Kyrpides NC, Klenk HP, Goker M. Genome-Based Taxonomic Classification of Bacteroidetes. Front Microbiol 2016; 7:2003.

Parent taxon: Chryseobacterium Vandamme et al. 1994

Assigned by: Vandamme P, Bernardet JF, Segers P, Kersters K, Holmes B. New perspectives in the classification of the flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int. J. Syst. Bacteriol. 1994; 44:827-831.

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Record number: 774714

This LPSN page was printed on 2024-04-27 00:34:29

Species Chryseobacterium indologenes

Species ***Chryseobacterium* *indologenes***